1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctctctcttttggctcaccggctgaagcccgttcaactgcaaccctcatgtgagatttctcgcatcaaagctcctttgcctaactttcgttgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG
species | Zea mays |
transcript | GRMZM2G120578_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|37380776|gb|CF627223.1|CF627223
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|6448423|gb|AW181189.1|AW181189
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCANAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|32866078|gb|CF005760.1|CF005760
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|211227788|gb|FL398706.1|FL398706
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCEST: gi|113701473|gb|EE678977.1|EE678977
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGC
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|161588702|gb|EY961924.1|EY961924
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: GAAGGAGCTACTAAAAGCGGGAAGGGAGATCTAGGTTTTATAATTCAGAG ATGCATATGGCEST: gi|78117804|gb|DV536191.1|DV536191
genomic: GAAGGAGCTACTAAA-GCGGGAAGGGAGATC-AGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGC
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|4804277|gb|AI666143.1|AI666143
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|78024870|gb|DV493257.1|DV493257
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|113690734|gb|DW849290.1|DW849290
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGEST: gi|12968943|gb|BG265784.1|BG265784
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTG
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|110496613|gb|EE015080.1|EE015080
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|211191319|gb|FL465409.1|FL465409
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|89247054|gb|DY618840.1|DY618840
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|37382012|gb|CF627919.1|CF627919
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAEST: gi|211042510|gb|FL401130.1|FL401130
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAG ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
genomic: TGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttc ... tgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAA
tcatgtgagatttctcgcatcaaagctcctttgcctaactttcgttgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG
gcctaac putative branch site (score: 127)
ctttcgtt CT-rich tract
taacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctctcttttggctcaccggctgaagcccgttcaactgcaaccctcatgtgagatttctcgcatcaaagctcctttgcctaactttcgttgttgaacagATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - -ccggctg
- - - - - - - - - - - - - - - - - - ctgcaac
- - - - - - - - - - - - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcaaa