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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgttaacatttccgtccttagttttccttcaagtacactttggttttcattaaaatggcaatttaattggttatgggtaggaaactagctgctcaaaaaccactgatgatttttcttttcctcaaacaatttggaccaaccttatcgtcctttttaatattgattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG

Basic information

species Zea mays
transcript GRMZM2G120517_T02
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4887369|gb|AI677468.1|AI677468
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|166654842|gb|EG143147.1|EG143147
EST:     TGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: TGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|7162396|gb|AW520018.1|AW520018
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|60342201|gb|DN209174.1|DN209174
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|24934386|gb|CA452604.1|CA452604
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|71327463|gb|DR800349.1|DR800349
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|67022725|gb|CO451474.1|CO451474
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|7216381|gb|AW562503.1|AW562503
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|101393103|gb|EB818482.1|EB818482
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCCCCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|60397958|gb|DN230774.1|DN230774
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|74246091|gb|DT654005.1|DT654005
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|7204636|gb|AW559169.1|AW559169
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|60349847|gb|DN216820.1|DN216820
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|5740004|gb|AI947694.1|AI947694
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCNCCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCCCCAGAACCNCAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|211351874|gb|FK984289.1|FK984289
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCGAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGSACCAGAACC
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACC
EST: gi|76920121|gb|DV168019.1|DV168019
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|76292512|gb|DV032080.1|DV032080
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|211216297|gb|FL460273.1|FL460273
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         A
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcag-
EST: gi|211216297|gb|FL460273.1|FL460273
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         A
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcag-
EST: gi|60342528|gb|DN209501.1|DN209501
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|71759931|gb|DR957868.1|DR957868
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|14244899|gb|BG842837.2|BG842837
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|88753851|gb|DY537992.1|DY537992
EST:     AGGCTCATGTTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCCCCGCAG                         GGATTTTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACA
EST: gi|7145161|gb|AW506642.1|AW506642
EST:     AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAG                         GGATTCTCTTTGGATGATTAGTGCGGC
genomic: AGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCACCGCAGgttagtgtta ... gattctgcagGGATTCTCTTTGGATGATTAGTGCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctcaaacaatttggaccaaccttatcgtcctttttaatattgattctgcagGGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG
                                         tattgat  putative branch site (score: 3)
                                  tttttaatattgattc  TA-rich tract