1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatttctcccacactagtttcaacgatgcgtattttattttgttctttttattgtatcaaataccatgagtaatactaatgtaatgatttctttgcatagACGTTGGACTACGTGAAGCAATGTGAGGCAGATATTGTCAACATGTCAATAATGCAACGTTCATCCTCTGGCTATGAGCCAACCGCAGATAAGCTTTATG
species | Zea mays |
transcript | GRMZM2G120329_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGCGGTTCCAAATGATGATGAAATTACTCCTACAGTCATGGTGCAG ACGTTGGACTACGTGAAGCAATGTGAGGCAGATATTGTCAACATGTCAATAEST: gi|78115074|gb|DV533462.1|DV533462
genomic: GTGGTGCGGTTCCAAATGATGATGAAATTACTCCTACAGTCATGGTGCAGgtaagattag ... ctttgcatagACGTTGGACTACGTGAAGCAATGTGAGGCAGATATTGTCAACATGTCAATA
EST: GTGGTGCGGTTCCAAATGATGATGAAATTACTCCTACAGTCATGGTGCAG ACGTTGGACTACGTGAAGCAATGTGAGGCAGATATTGTCAACATGTCAATA
genomic: GTGGTGCGGTTCCAAATGATGATGAAATTACTCCTACAGTCATGGTGCAGgtaagattag ... ctttgcatagACGTTGGACTACGTGAAGCAATGTGAGGCAGATATTGTCAACATGTCAATA
tttttattgtatcaaataccatgagtaatactaatgtaatgatttctttgcatagACGTTGGACTACGTGAAGCAATGTGAGGCAGATATTGTCAACATGTCAATAATGCAACGTTCATCCTCTGGCTATGAGCCAACCGCAGATAAGCTTTATG
tactaat putative branch site (score: 56)
tttctttgc putative PPT
taatactaatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttctcccacactagtttcaacgatgcgtattttattttgttctttttattgtatcaaataccatgagtaatactaatgtaatgatttctttgcatagACGTTGGACTACGTGAAGCAATGTGAGGCAGATATTGTCAACATGTCAATAATGCAACGTTCATCCTCTGGCTATGAGCCAACCGCAGATAAGCTTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - ccacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccatg