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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttctctaatctgattgcgtcaagagatagtctctctatgcaatcagccaggcatcaaaacctgttgctgagtgaagtgcctacctgggaaaaaaaatgcagGGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAGAAGCAGCGCGTGGCCATCGCCCGTGCGATCGTGAAGGACCCTCGGATCC

Basic information

species Zea mays
transcript GRMZM2G119894_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119894_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g18670.1 (Oryza sativa), 3'ss of exon 10
gttagtttctctaatctgattgcgtcaagagatagtctctctatgcaatcagccaggcatcaaaacctgttgctgagtgaagtgcct-acctgggaaaaaaaatgcagGGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAGAAGCAGCGCGTGGCCATCGCCCGTGCGATCGTGAAGGACCCTCGGATCC
|||  |||||    | |  ||   |  |  | |  |  || | ||  || |   | || |  |||| | || || |  ||  ||  | |||||    ||||  || |||| |||| |||||  ||||||||||| ||||||||| |||| ||||| || ||||||||  | || ||||| |||||||| |||||||| ||   |||||
gtttctttcta-ggtttctttcttttcattggtgtttgctat-tgtgattaa--atgc-tagaaacatttttctcaaagatttgttttacctg----aaaatttgtagGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTCAGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCAAGATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166566553|gb|EG263566.1|EG263566
EST:     AACGCTCACAAGTTCATCAGCTCGGCGCTCCAG                         GGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGGGGGCAG
genomic: AACGCTCACAAGTTCATCAGCTCGGCGCTCCAGgttagtttct ... aaaaatgcagGGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAG
EST: gi|78180740|gb|DV551113.1|DV551113
EST:     CTGCCGCACAACTGGCAAACGCTCACAAGTTCATCAGCTCGGCGCTCCAG                         GGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAG
genomic: CTGCCGCACAACTGGCAAACGCTCACAAGTTCATCAGCTCGGCGCTCCAGgttagtttct ... aaaaatgcagGGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAG
EST: gi|6827136|gb|AW330779.1|AW330779
EST:     CTGCCGCACAACTGGCAAACGCTCACAAGTTCATCAGCTCGGCGCTCCAG                         GGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAG
genomic: CTGCCGCACAACTGGCAAACGCTCACAAGTTCATCAGCTCGGCGCTCCAGgttagtttct ... aaaaatgcagGGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaggcatcaaaacctgttgctgagtgaagtgcctacctgggaaaaaaaatgcagGGATATGACACAATGGTTGGAGAGCGTGGAGCTCAGCTGTCAGGAGGGCAGAAGCAGCGCGTGGCCATCGCCCGTGCGATCGTGAAGGACCCTCGGATCC
                                          aaaaaaaat  TA-rich tract