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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccgatcgtcatcttggacctgaagcagctataaaatgtctgtcgctgaagcttctttgtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCGGAGCTGGGCAGCGTGCGGAGCGAGGACCTGGCGGTGCTGTGCAGCGTGG

Basic information

species Zea mays
transcript GRMZM2G119759_T04
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76931734|gb|DV172825.1|DV172825
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|40334564|gb|CK368634.1|CK368634
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|60345284|gb|DN212257.1|DN212257
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|60356012|gb|DN222985.1|DN222985
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|44901335|gb|CK827880.1|CK827880
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|148961326|gb|EE012055.2|EE012055
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|166645174|gb|EG146810.1|EG146810
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTAACCTCC
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTA-CCTCC
EST: gi|149102188|gb|EE188116.2|EE188116
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|18650219|gb|BM499038.1|BM499038
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|45846935|gb|CN070878.1|CN070878
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggacctgaagcagctataaaatgtctgtcgctgaagcttctttgtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCGGAGCTGGGCAGCGTGCGGAGCGAGGACCTGGCGGTGCTGTGCAGCGTGG
                                      cttctttgt  CT-rich tract
                tataaaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagccgatcgtcatcttggacctgaagcagctataaaatgtctgtcgctgaagcttctttgtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCGGAGCTGGGCAGCGTGCGGAGCGAGGACCTGGCGGTGCTGTGCAGCGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT