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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgatttatcccttctgtagaccccactcatgtttgacctccaacactaggtcttccttttttttaattatcattctaaaagttcgattttgatgtgcagATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG

Basic information

species Zea mays
transcript GRMZM2G119725_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119725_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 10
tcgatttatcccttctgtagaccccactcatgtttgacctccaacactaggtcttccttttttttaattatcattctaaaagttcgattttgatgtgcagATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG
                |||     |          ||  |  |        |     || |||      ||   | ||  |  |  | ||||||||||||||||||||| || |||||||| |||||||| ||  |||||||||||||||| |||||||||||||||
----------------gtaaggggctaagggcccagaattttattgtgtatttaaatttctttgcccaaatatctgtattacattcaatttgatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG

upper sequence: GRMZM2G119725_T01 (Zea mays), 3'ss of exon 10
lower sequence: AT1G08040.2 (Arabidopsis thaliana), 3'ss of exon 10
---tcgatttatcccttctgtagaccccactcatgtttgacctccaacactaggtcttccttttttttaattatcattctaaaagttcgattttgatgtgcagATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG
     | | | | |  ||| |    |   |||    ||   ||     |||      | ||| | |  |||| ||  |   |    |   ||   |  ||||| |||||||||||||||||| | || || || ||| | |||||||| |||||||||||||||||||||
gtacggctctgtactctctttctctcattctctctctttgactaacctactgaagagtgcttatatc-aattttcgataacaggtgtgttttcccacttgcagGTTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928292|gb|EE284900.2|EE284900
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGT
EST: gi|149108357|gb|EE292695.2|EE292695
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaggtcttccttttttttaattatcattctaaaagttcgattttgatgtgcagATTTGTTGAGATTATGGCAACAGTGTTCTCCAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG
            ttttttttaattatca  TA-rich tract