1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttggtgcatggagactcacccacgcacacagtagactttaattctatgtttgcagcttctgtatattcattttcctctaataagattgtgcttattcttttgatgatggcgatgtttgttctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTTAAGAAAAGACACAGCTCTCCCATCCCCTGAATGGTCATCAGATCACAT
species | Zea mays |
transcript | GRMZM2G118467_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|33092350|gb|CF052344.1|CF052344
genomic: AAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: ATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|211013492|gb|FL469772.1|FL469772
genomic: ATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|211427747|gb|FL230779.1|FL230779
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: TAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|211427745|gb|FL230777.1|FL230777
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|149111795|gb|EE190948.2|EE190948
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|211427746|gb|FL230778.1|FL230778
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|211427749|gb|FL230781.1|FL230781
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: TATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|211241666|gb|FL441721.1|FL441721
genomic: TATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|60343893|gb|DN210866.1|DN210866
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|32824898|gb|CD964620.1|CD964620
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|148934305|gb|EC878331.2|EC878331
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|6194468|gb|AW146572.1|AW146572
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTEST: gi|32793111|gb|CD945347.1|CD945347
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
EST: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAG CGGACTCATTGACAGTGGATTCATTATTGGCACTTTTGGATGAAGAAAGCT
genomic: AAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcat ... tctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCT
ctctaataagattgtgcttattcttttgatgatggcgatgtttgttctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTTAAGAAAAGACACAGCTCTCCCATCCCCTGAATGGTCATCAGATCACAT
tgtttgttctctttc CT-rich tract
ttattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgcatggagactcacccacgcacacagtagactttaattctatgtttgcagcttctgtatattcattttcctctaataagattgtgcttattcttttgatgatggcgatgtttgttctctttcagCGGACTCATTGACAGTGGATTCATTATTGGAACTTTTGGATGAAGAAAGCTTAAGAAAAGACACAGCTCTCCCATCCCCTGAATGGTCATCAGATCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA