1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gcaagtgctcgatcgttcaattcgcgtgcctttcttttcatttgtgtcattttacatgtaacaatcggatcatccattgttttgtgattattgtgtgttatattaccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACGGACGCATCGGGCTCATACGTGGTGTACGCGCCGGTGGATGTGGTGGCCA
species | Zea mays |
transcript | GRMZM2G118063_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT AGCCCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACGEST: gi|87156118|gb|DY400907.1|DY400907
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: TTGCTAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT AGCCCAAGCTCCTACCAGAGCAACTTGCTGATCCTCCGGGAGAGCTGCTCGEST: gi|22472184|gb|BU036664.1|BU036664
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT AGCCCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACGEST: gi|76017721|gb|DT944891.1|DT944891
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT AGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACGEST: gi|5566756|gb|AI881622.1|AI881622
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT AGCCCAAACTCCAAC
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAAC
acaatcggatcatccattgttttgtgattattgtgtgttatattaccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACGGACGCATCGGGCTCATACGTGGTGTACGCGCCGGTGGATGTGGTGGCCA
atgtaac putative branch site (score: 3)
tgttatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgctcgatcgttcaattcgcgtgcctttcttttcatttgtgtcattttacatgtaacaatcggatcatccattgttttgtgattattgtgtgttatattaccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACGGACGCATCGGGCTCATACGTGGTGTACGCGCCGGTGGATGTGGTGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG