Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcaacggaattccgtgtttcgcatgaacacgccacgccgcataccaagggaatcgtatttacatcgatcttttttttatttcttttctgtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCACGAGGGTGCGGTTCTACAGGAGCTACATCGGCCAGCTGAAGAAGGCCAT

Basic information

species Zea mays
transcript GRMZM2G118003_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118003_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g49600.5 (Oryza sativa), 3'ss of exon 9
--------gtact-caacggaattccgtgtttcgcatgaacacgccacgccgcata--ccaagggaatcgtatttacatcgatcttttttttatttcttttctgtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCACGAGGGTGCGGTTCTACAGGAGCTACATCGGCCAGCTGAAGAAGGCCAT
        | ||| |  |   || ||    ||||  |   | | |||    ||| |  |   | | |    |        || | | |    || |    ||| ||| | |||||||||| || ||||  ||| | | ||| ||||||||| |||||||| |||||||||| |  ||||||||||||||| ||  ||||||||||||||||||
gtagctctgaacttctcccatatccctccattcgattttccgctccatattgcacaatctgcgtgtaatccagaagtgatgaacatatcaacatattccatct-tgtcatcagGAATGGATCAACCTGCGAACCTCAGCCGCGACCAGTACTTGCGCGACACCACGAGGGTTCATTTCTACAGGAGCTACCTCACCCAGCTGAAGAAGGCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211416177|gb|FL300104.1|FL300104
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGC-A
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|31998558|gb|CD662133.1|CD662133
EST:     ATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: ATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|4388066|gb|AI491238.1|AI491238
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|31909830|gb|CD651115.1|CD651115
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|101393332|gb|EB818597.1|EB818597
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60350347|gb|DN217320.1|DN217320
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67010696|gb|CO439445.1|CO439445
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|40335304|gb|CK369374.1|CK369374
EST:     CAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTCGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|31359746|gb|CD444103.1|CD444103
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|4776298|gb|AI665301.1|AI665301
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67017631|gb|CO446380.1|CO446380
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60347037|gb|DN214010.1|DN214010
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67021285|gb|CO450034.1|CO450034
EST:     ACCTNCA-GGAGAAGTATGGGAAATCCA-CGATCTACATAACGGAGAACG                         GGATGGACCANNCCTGGAA-CTTGACCCGAGACC-GTAC
genomic: ACCT-CAAGGAGAAGTATGGGAA-TCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAG-CCTGGAAACTTGACCCGAGACCAGTAC
EST: gi|26457004|gb|CA828587.1|CA828587
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|32916227|gb|CF021039.1|CF021039
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|31911248|gb|CD651829.1|CD651829
EST:     GAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: GAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|24768905|gb|CA404034.1|CA404034
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|21391129|gb|BQ529178.1|BQ529178
EST:     CCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCC
genomic: CCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60356597|gb|DN223570.1|DN223570
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|4681208|gb|AI629878.1|AI629878
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|113671002|gb|DW821460.1|DW821460
EST:     TCCAACGTATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTAACCTGCGCGACGCC
genomic: TCCAACG-ATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTA-CCTGCGCGACGCC
EST: gi|60337962|gb|DN204935.1|DN204935
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|37384568|gb|CF629372.1|CF629372
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211099230|gb|FL470679.1|FL470679
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60352240|gb|DN219213.1|DN219213
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211416184|gb|FL300111.1|FL300111
EST:     TGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: TGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|22472957|gb|BU037437.1|BU037437
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|30032219|gb|CB834070.1|CB834070
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|31664105|gb|CD573285.1|CD573285
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|148928823|gb|EC873677.2|EC873677
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|61119826|gb|DN560787.1|DN560787
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67016031|gb|CO444780.1|CO444780
EST:     TACCTCAAGGAGA-GTATGGGAAATCCA-CGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGNAAACTTGACCCGAGAC-AGTACCTGCGCGACGCCA
genomic: TACCTCAAGGAGAAGTATGGGAA-TCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60399372|gb|DN232186.1|DN232186
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211416185|gb|FL300112.1|FL300112
EST:     TGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: TGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67030931|gb|CO459680.1|CO459680
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|24765980|gb|CA401138.1|CA401138
EST:     CAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|51592877|gb|CV072023.1|CV072023
EST:     CTGCCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211275276|gb|FL057455.1|FL057455
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|19822445|gb|BQ048469.1|BQ048469
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67016059|gb|CO444808.1|CO444808
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|32835997|gb|CD975675.1|CD975675
EST:     CTACCTCAAGGAGAAGTATAGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60357435|gb|DN224408.1|DN224408
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGGGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|31910375|gb|CD651392.1|CD651392
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60339007|gb|DN205980.1|DN205980
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|4874492|gb|AI674012.1|AI674012
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|21759908|gb|BQ635449.1|BQ635449
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|37382615|gb|CF628265.1|CF628265
EST:     CAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|26457057|gb|CA828640.1|CA828640
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|19822253|gb|BQ048277.1|BQ048277
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60397408|gb|DN230224.1|DN230224
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211416186|gb|FL300113.1|FL300113
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67010847|gb|CO439596.1|CO439596
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|28361798|gb|CB240154.1|CB240154
EST:     GTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: GTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60353267|gb|DN220240.1|DN220240
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|6501169|gb|AW202542.1|AW202542
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|19769587|gb|BQ034308.1|BQ034308
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAGCGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|32940194|gb|CF045013.1|CF045013
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|5069778|gb|AI737743.1|AI737743
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCC
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|32857649|gb|CD997330.1|CD997330
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60338477|gb|DN205450.1|DN205450
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|71331058|gb|DR802359.1|DR802359
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|60336744|gb|DN203717.1|DN203717
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|28982563|gb|BQ538179.2|BQ538179
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67021301|gb|CO450050.1|CO450050
EST:     CTACCTCAAGGAGGAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGAC-AGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|40334112|gb|CK368182.1|CK368182
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211416181|gb|FL300108.1|FL300108
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|32165128|gb|CD670446.1|CD670446
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|29543409|gb|CB603805.1|CB603805
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|148934073|gb|EC878087.2|EC878087
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|67019109|gb|CO447858.1|CO447858
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211416182|gb|FL300109.1|FL300109
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|4647207|gb|AI622282.1|AI622282
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|211416178|gb|FL300105.1|FL300105
EST:     CTACCTCAAGGAGAAGTATGGGAATCCCACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGGAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|44900753|gb|CK827298.1|CK827298
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCA
EST: gi|32833534|gb|CD973212.1|CD973212
EST:     CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACG                         GAATGGACCAGCCTGGAAGACTTGACCCGAGACCAGTACCTGCGCGACGCC
genomic: CTACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGgtactcaacg ... gtgttaccagGAATGGACCAGCCTGGAA-ACTTGACCCGAGACCAGTACCTGCGCGACGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaagggaatcgtatttacatcgatcttttttttatttcttttctgtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCACGAGGGTGCGGTTCTACAGGAGCTACATCGGCCAGCTGAAGAAGGCCAT
                        tcttttttttatttct  CT-rich tract
                       atcttttttttatttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactcaacggaattccgtgtttcgcatgaacacgccacgccgcataccaagggaatcgtatttacatcgatcttttttttatttcttttctgtgttaccagGAATGGACCAGCCTGGAAACTTGACCCGAGACCAGTACCTGCGCGACGCCACGAGGGTGCGGTTCTACAGGAGCTACATCGGCCAGCTGAAGAAGGCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG