1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tataagaacatgttcaaccatcagaacaatggaacgggtagattgctgatgagaaaaacaagctggcataaatgaataattcgcaattggcatcttgcagGTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGATCTGCAGAAAGCCTACGAGGAGGTCGAGGTGGAGAGCCTTATTCAGGTGG
species | Zea mays |
transcript | GRMZM2G115420_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGG GTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGATEST: gi|74235278|gb|DT643192.1|DT643192
genomic: TTGATCTAGCTCGTCTTGCAAATGATGACGATGTTATGCTTCTTGACTGGgtaagtaaat ... catcttgcagGTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGAT
EST: TTGATCTAGCTCGTCTTGCAAATGATGACGATGTTATGCTTCTTGACTGG GTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGATEST: gi|16925542|gb|BM078610.1|BM078610
genomic: TTGATCTAGCTCGTCTTGCAAATGATGACGATGTTATGCTTCTTGACTGGgtaagtaaat ... catcttgcagGTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGAT
EST: TTGATCTAGCTCGTCTTGCAAATGATGACGATGTTATGCTTCTTGACTGG GTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGAT
genomic: TTGATCTAGCTCGTCTTGCAAATGATGACGATGTTATGCTTCTTGACTGGgtaagtaaat ... catcttgcagGTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGAT
ctgatgagaaaaacaagctggcataaatgaataattcgcaattggcatcttgcagGTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGATCTGCAGAAAGCCTACGAGGAGGTCGAGGTGGAGAGCCTTATTCAGGTGG
tgctgat putative branch site (score: 578)
ataaatgaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataagaacatgttcaaccatcagaacaatggaacgggtagattgctgatgagaaaaacaagctggcataaatgaataattcgcaattggcatcttgcagGTGAAAGGACTGTTGAAGGAGAAGAAGGTGGAGATGCTGGTGGACCCAGATCTGCAGAAAGCCTACGAGGAGGTCGAGGTGGAGAGCCTTATTCAGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - catgttc
- - - - - - - - - - - -gaacaat
- - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctggca