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gtgagcatttcagtgtaatgctttgtttattgtagactacctgcattagctttttttttgtctggatcactaaaaataacaagttcttttaggatattgatattaatgtttgtcgaaggtgaaatatttacttatttatgtaaatgcctatgtatttacagAGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTCACTGCCAACGGATGGGTGCAATCCTATGGATCACGCTGTGTGAAGCCAC
species | Zea mays |
transcript | GRMZM2G112149_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTEST: gi|32928320|gb|CF033132.1|CF033132
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGT
EST: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTEST: gi|67023444|gb|CO452193.1|CO452193
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGT
EST: GAGCTTGACATTGATGTGCGTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTCEST: gi|33102730|gb|CF062690.1|CF062690
genomic: GAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTC
EST: AGATCCAAGAGGAGCTTGACAT-GATGTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTACEST: gi|32846614|gb|CD986295.1|CD986295
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGTAC
EST: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTEST: gi|211333690|gb|FL127548.1|FL127548
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGT
EST: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTCEST: gi|33101594|gb|CF061554.1|CF061554
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTC
EST: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTACCTCGGEST: gi|32831682|gb|CD971360.1|CD971360
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGTACTTCGG
EST: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAG ANGAA-TGACAEST: gi|15199045|gb|BI423625.1|BI423625
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagA-GAAATGACA
EST: GTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTCEST: gi|32850228|gb|CD989909.1|CD989909
genomic: GTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTC
EST: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAG AGAAATGACATGGTTGAGT
genomic: AGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAGCCAGAGgtgagcattt ... gtatttacagAGAAATGACATGGTTGAGT
tgtttgtcgaaggtgaaatatttacttatttatgtaaatgcctatgtatttacagAGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTCACTGCCAACGGATGGGTGCAATCCTATGGATCACGCTGTGTGAAGCCAC
tgaaatatttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatttcagtgtaatgctttgtttattgtagactacctgcattagctttttttttgtctggatcactaaaaataacaagttcttttaggatattgatattaatgtttgtcgaaggtgaaatatttacttatttatgtaaatgcctatgtatttacagAGAAATGACATGGTTGAGTACTTCGGTGAGCAATTATCTGGTTTTGCGTTCACTGCCAACGGATGGGTGCAATCCTATGGATCACGCTGTGTGAAGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC