1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctagctgttacttgtagtgcttgcagccttttgctatcagcataagtggcgatcaaagggtctctgtttctgattttttttgttctctgctttgatcagTACTGCATCTGGGACCATTTTAAGGAGCTAGATAATATGGAGTCAAGTAGATCCATGAACCTTGCGAAGCTAGTTGCGGAGATGCTGTTGAACTTCACGC
species | Zea mays |
transcript | GRMZM2G111138_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTTATAAGCAAGGATGTTGCAGAGACNNNNNNNCTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGCEST: gi|61118078|gb|DN559039.1|DN559039
genomic: TGTTATAAGCAAGGATGTTGCAGAGACAAAAAAACTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGC
EST: TGTTATAAGCAAGGATGTTGCAGAGACNNNNNNNCTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGCEST: gi|60340241|gb|DN207214.1|DN207214
genomic: TGTTATAAGCAAGGATGTTGCAGAGACAAAAAAACTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGC
EST: TTGCTTCCAAGCTATGCAACCATGAGAAAAACCACAAGTTCAGCTTGCAG TACTGCATCTGGGACCATTTTAAGGAGCTAGATAATATGGAGTCAAGTAGAEST: gi|60345567|gb|DN212540.1|DN212540
genomic: TTGCTTCCAAGCTATGCAACCATGAGAAAAACCACAAGTTCAGCTTGCAGgtatattgtt ... ctttgatcagTACTGCATCTGGGACCATTTTAAGGAGCTAGATAATATGGAGTCAAGTAGA
EST: TGTTATAAGCAAGGATGTTGCAGAGACNNNNNNNCTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGCEST: gi|6564094|gb|AW231716.1|AW231716
genomic: TGTTATAAGCAAGGATGTTGCAGAGACAAAAAAACTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGC
EST: TGTTATAAGCAAGGATGTTGCAGAGACNNNNNNNCTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGCEST: gi|60346597|gb|DN213570.1|DN213570
genomic: TGTTATAAGCAAGGATGTTGCAGAGACAAAAAAACTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGC
EST: TTGCTTCCAAGCTATGCAACCATGAGAAAAACCACAAGTTCAGCTTGCAG TACTGCATCTGGGACCATTTTAAGGAGCTAGATAATATGGAGTCAAGTAGAEST: gi|61118077|gb|DN559038.1|DN559038
genomic: TTGCTTCCAAGCTATGCAACCATGAGAAAAACCACAAGTTCAGCTTGCAGgtatattgtt ... ctttgatcagTACTGCATCTGGGACCATTTTAAGGAGCTAGATAATATGGAGTCAAGTAGA
EST: TGTTATAAGCAAGGATGTTGCAGAGACNNNNNNNCTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGC
genomic: TGTTATAAGCAAGGATGTTGCAGAGACAAAAAAACTTCTTCAGCTTGCAGCTGCTCAACGGATGAACACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGC
agtggcgatcaaagggtctctgtttctgattttttttgttctctgctttgatcagTACTGCATCTGGGACCATTTTAAGGAGCTAGATAATATGGAGTCAAGTAGATCCATGAACCTTGCGAAGCTAGTTGCGGAGATGCTGTTGAACTTCACGC
ttctgat putative branch site (score: 3)
tttctgattttttttg CT-rich tract
tttctgatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagctgttacttgtagtgcttgcagccttttgctatcagcataagtggcgatcaaagggtctctgtttctgattttttttgttctctgctttgatcagTACTGCATCTGGGACCATTTTAAGGAGCTAGATAATATGGAGTCAAGTAGATCCATGAACCTTGCGAAGCTAGTTGCGGAGATGCTGTTGAACTTCACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT