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gtatgatctgtttgagtatcttattttctacaaaatttgttacagattctagaaaagcgcaaggaattcatgacactcccctttgccttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG
species | Zea mays |
transcript | GRMZM2G109383_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCAAATGCTGTEST: gi|67018536|gb|CO447285.1|CO447285
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
EST: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTEST: gi|31363628|gb|CD447985.1|CD447985
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
EST: GGCGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTEST: gi|67025909|gb|CO454658.1|CO454658
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
EST: GTGCTGCAACTGATGGAGATGCTGACCGCAACATGATTCTTTGGTAAAAG ATTCTTTGTGACACCGTCEST: gi|31353391|gb|CD437748.1|CD437748
genomic: GTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTT-GGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTC
EST: GGCGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTEST: gi|32910896|gb|CF015708.1|CF015708
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
EST: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCAAATGCTGTEST: gi|67022599|gb|CO451348.1|CO451348
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
EST: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTEST: gi|31354675|gb|CD439032.1|CD439032
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
EST: GGCGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTEST: gi|211541124|gb|FL006425.1|FL006425
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
EST: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAG ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTTGGTAAAAGgtatgatctg ... cttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGT
acagattctagaaaagcgcaaggaattcatgacactcccctttgccttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG
ctcccctttgccttgc CT-rich tract
tagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctgtttgagtatcttattttctacaaaatttgttacagattctagaaaagcgcaaggaattcatgacactcccctttgccttgctatagATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG