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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaaaaaataacagtgacgccttgaaacttagtatcatatctttttaattaatccttaataattctaccgggcaatgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAGGGCGTTGTTGCTGGAATGCCATCGACAAAGAATATGGTTCCAAACTTCG

Basic information

species Zea mays
transcript GRMZM2G108849_T04
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108849_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g24550.4 (Oryza sativa), 3'ss of exon 11
gtaagttc----aaaaaataacagtgacgcct-tgaaacttagtatcatatctttttaattaatccttaataat-tctaccgggcaatgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAGGGCGTTGTTGCTGGAATGCCATCGACAAAGAATATGGTTCCAAACTTCG
|||||| |     ||| |||  |||        |||||  | | || || | | |||  | |    |||||||| | |    ||  || ||    ||||||| |||||||||||||||||||||| ||| |||||||||||||| || |  ||||||||||| ||||| ||||| ||||| |||||    ||||  |
gtaagtccttggcaaatatataagttcaataagtgaaatgttgcataatttgtattttttgagctattaataatgtttggtcggtgatactg-gtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAAGATGTTGTTGCTGGTATGCCCTCGACGAAGAACATGGTGAGGAACTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13177947|gb|BG349205.1|BG349205
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|33100201|gb|CF060161.1|CF060161
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|6095470|gb|AW120137.1|AW120137
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|37383229|gb|CF628607.1|CF628607
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAT
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|5510799|gb|AI857183.1|AI857183
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|32924024|gb|CF028836.1|CF028836
EST:     CTTCTGCCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|33103523|gb|CF063483.1|CF063483
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|31354590|gb|CD438947.1|CD438947
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAC                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCAT
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCAT
EST: gi|78022002|gb|DV490389.1|DV490389
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|44901164|gb|CK827709.1|CK827709
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60357237|gb|DN224210.1|DN224210
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60347914|gb|DN214887.1|DN214887
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGNATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|33101787|gb|CF061747.1|CF061747
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|31355458|gb|CD439815.1|CD439815
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAC                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|18963343|gb|BM660382.1|BM660382
EST:     CTTCTGGCAAATCAGTGTAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGC
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGC
EST: gi|60353949|gb|DN220922.1|DN220922
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|5005885|gb|AI711947.1|AI711947
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|33103672|gb|CF063632.1|CF063632
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60347557|gb|DN214530.1|DN214530
EST:     CTTTTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|32941550|gb|CF046369.1|CF046369
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|32797001|gb|CD949237.1|CD949237
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|32796767|gb|CD949003.1|CD949003
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|5922141|gb|AW055411.1|AW055411
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|24769380|gb|CA404509.1|CA404509
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAC                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|6020622|gb|AW065655.1|AW065655
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|37376423|gb|CF624736.1|CF624736
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|32941251|gb|CF046070.1|CF046070
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|14203538|gb|BG837215.1|BG837215
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60395804|gb|DN228674.1|DN228674
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60400644|gb|DN233451.1|DN233451
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60338736|gb|DN205709.1|DN205709
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|5525631|gb|AI861524.1|AI861524
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|67013050|gb|CO441799.1|CO441799
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAAATGAATGTGGCATCGAGGA
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAA-TGAATGTGGCATCGAGGA
EST: gi|5525441|gb|AI861334.1|AI861334
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|16377920|gb|BI992190.1|BI992190
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|14203094|gb|BG836771.1|BG836771
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|211495925|gb|FL479314.1|FL479314
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|113702838|gb|EE680342.1|EE680342
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60350570|gb|DN217543.1|DN217543
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|211486033|gb|FL092385.1|FL092385
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTT
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTT
EST: gi|24934282|gb|CA452500.1|CA452500
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|6022514|gb|AW067547.1|AW067547
EST:     GAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: GAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|60348499|gb|DN215472.1|DN215472
EST:     CTTTTGGCAAATCAGTGGAATAGAGGCGGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|32797163|gb|CD949399.1|CD949399
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|5296139|gb|AI783014.1|AI783014
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|5922310|gb|AW055599.1|AW055599
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
EST: gi|5361062|gb|AI795677.1|AI795677
EST:     CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT                         GATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG
genomic: CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATgtaagttcaa ... tgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatcatatctttttaattaatccttaataattctaccgggcaatgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAGGGCGTTGTTGCTGGAATGCCATCGACAAAGAATATGGTTCCAAACTTCG
      atatctttttaattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttcaaaaaataacagtgacgccttgaaacttagtatcatatctttttaattaatccttaataattctaccgggcaatgctttacagGATGGATACTTCAAGATCATAAGGGGCAAAAATGAATGTGGCATCGAGGAGGGCGTTGTTGCTGGAATGCCATCGACAAAGAATATGGTTCCAAACTTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA