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gttagcactgcccactcttcaaactagacaccaaaataaaagggaccagtcttacatgcatgttttgttaatccctatgtttgggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTTG
species | Zea mays |
transcript | GRMZM2G108829_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|8103639|gb|AW928260.1|AW928260
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|211496286|gb|FL041698.1|FL041698
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATATGCTTATGATTCTGCAGTEST: gi|32871065|gb|CF010747.1|CF010747
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|32932540|gb|CF037352.1|CF037352
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|31350422|gb|CD434779.1|CD434779
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|32869779|gb|CF009461.1|CF009461
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|47961778|gb|CN844487.1|CN844487
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCACCTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|67011156|gb|CO439905.1|CO439905
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|211496285|gb|FL041697.1|FL041697
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|5932684|gb|AW057045.1|AW057045
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: CTCAACTCGCTG GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: CTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
aaagggaccagtcttacatgcatgttttgttaatccctatgtttgggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTTG
tgttaat putative branch site (score: 3)
ttttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcactgcccactcttcaaactagacaccaaaataaaagggaccagtcttacatgcatgttttgttaatccctatgtttgggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG