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...gaactagtgaccatttttgcccttgtagggaaggttttaaaagtccgagatggaatttcttttgaaacactttaatctttttttgttatacctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGGAAAAG
species | Zea mays |
transcript | GRMZM2G107731_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|149071350|gb|EE159745.2|EE159745
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: CAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|71758247|gb|DR956184.1|DR956184
genomic: CAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|60358220|gb|DN225193.1|DN225193
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAEST: gi|78022706|gb|DV491093.1|DV491093
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACA
EST: CGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|37394977|gb|CF634768.1|CF634768
genomic: CGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|213169996|gb|FM189145.1|FM189145
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|71774541|gb|DR972419.1|DR972419
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|32931571|gb|CF036383.1|CF036383
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCCTTGAAACCTACAAGCAGGAGATGEST: gi|78114092|gb|DV532481.1|DV532481
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: GGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGEST: gi|60337106|gb|DN204079.1|DN204079
genomic: GGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: GACGGTGAAAGATTTCAGCACTTTCAG GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: GACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
cgagatggaatttcttttgaaacactttaatctttttttgttatacctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGGAAAAG
ctttaat putative branch site (score: 74)
cctttatc putative PPT
tttaatctttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactagtgaccatttttgcccttgtagggaaggttttaaaagtccgagatggaatttcttttgaaacactttaatctttttttgttatacctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - -tgccctt