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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcatgatttgacttcgtagaatactcttttgatctgataattccttgtaacaaatgatttagctatcatgtttctttcttttttacagTTGCTATATGGCTTCAATAATGCAAGTCATGTTTTCAATCCATCCTTTCATATCAAG

Basic information

species Zea mays
transcript GRMZM2G107696_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107696_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g08200.1 (Oryza sativa), 3'ss of exon 6
gtagcatgatttgacttcgtagaatactcttttgatctgataattccttgtaacaaatgat-ttagctatcatgt-ttctttcttttttacagTTGCTATATGGCTTCAATAATGCAAGTCATGTTTTCAATCCATCCTTTCATATCAAG
      |   ||   ||| | |  |    |  |||    ||  |   |||||| || |  | |||  ||     |    || ||| ||| ||||||||||||||| ||| |||||||||| ||||||||||  |||||||| |||||| |
-----gtagctttggttcattggttgacgtcatga----attttcttttgtaataatttctcttatgtaatgcatgcgtttccttctttgcagTTGCTATATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116815278|gb|EC858437.1|EC858437
EST:     GAGCTTCTGTTTGGACCCGGCTATAATGGTCTTGCGAATCTTGGGAATAG                         TTGCTATATGGCTTCAATA-TGCAAGTCAT
genomic: GAGCTTCTGTTTGGACCCGGCTATACTGGTCTTGCGAATCTTGGGAATAGgtagcatgat ... ttttttacagTTGCTATATGGCTTCAATAATGCAAGTCAT
EST: gi|71330491|gb|DR802012.1|DR802012
EST:     GAGCTTCTGTTTGGACCCGGCTATACTGGTCTTGCGAATCTTGGGAATAG                         TTGCTATATGGCTTCAATAATGCAAGTCATGTTTTCAATCCATCCTTTCAT
genomic: GAGCTTCTGTTTGGACCCGGCTATACTGGTCTTGCGAATCTTGGGAATAGgtagcatgat ... ttttttacagTTGCTATATGGCTTCAATAATGCAAGTCATGTTTTCAATCCATCCTTTCAT
EST: gi|211413392|gb|FL397573.1|FL397573
EST:     GAGCTTCTGTTTGGACCCGGCTATACTGGTCTTGCGAATCTTGGGAATAG                         TTGCTATATGGCTTCAATAATGCAAGTCATGTTTTCAATCCATCCTTTCAT
genomic: GAGCTTCTGTTTGGACCCGGCTATACTGGTCTTGCGAATCTTGGGAATAGgtagcatgat ... ttttttacagTTGCTATATGGCTTCAATAATGCAAGTCATGTTTTCAATCCATCCTTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgataattccttgtaacaaatgatttagctatcatgtttctttcttttttacagTTGCTATATGGCTTCAATAATGCAAGTCATGTTTTCAATCCATCCTTTCATATCAAG
           ttgtaac  putative branch site (score: 2)
                             ctatcatgtttctttc  putative PPT
                                     tttctttctttttta  TA-rich tract