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...ttgtgtcatttcttcttgcaattggtgtacctcctttaatcaatgttttgattctaagctgtttcaaatttgtacatgcaatttcttgcatggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTGGTGGTGTTGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGC
species | Zea mays |
transcript | GRMZM2G107309_T06 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTEST: gi|32930071|gb|CF034883.1|CF034883
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTEST: gi|211416077|gb|FK952655.1|FK952655
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTEST: gi|211416078|gb|FK952656.1|FK952656
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: CATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTEST: gi|32932636|gb|CF037448.1|CF037448
genomic: CATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAACTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTEST: gi|211416079|gb|FK952657.1|FK952657
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTEST: gi|9732030|gb|BE510782.1|BE510782
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGTATCCGTEST: gi|211416082|gb|FK952660.1|FK952660
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTEST: gi|32834913|gb|CD974591.1|CD974591
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
EST: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG GTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
genomic: ATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGgtatctatct ... tggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGT
ttttgattctaagctgtttcaaatttgtacatgcaatttcttgcatggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTGGTGGTGTTGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGC
ttttgat putative branch site (score: 4)
tttcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtcatttcttcttgcaattggtgtacctcctttaatcaatgttttgattctaagctgtttcaaatttgtacatgcaatttcttgcatggatctcagGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTGGTGGTGTTGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG