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...tgcccgtatgtgcaccattatatattctgtatctccatgagtttgctagctgtccaaattaacaattaaatggaatgtctgttccatttttccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG
species | Zea mays |
transcript | GRMZM2G107309_T05 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACAGGGACAAAACA GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAEST: gi|211416077|gb|FK952655.1|FK952655
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: ATGTGCACCATGGAAATGGCACACAAGAGATGTTCGACGGGGACAAAACA GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAEST: gi|211416079|gb|FK952657.1|FK952657
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: TATTCGACGGGGACAAAACA GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAEST: gi|9732030|gb|BE510782.1|BE510782
genomic: TATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACAGGGACAAAACA GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAEST: gi|211416082|gb|FK952660.1|FK952660
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: ATGTGCACCATGGAAATGGCACACAAGAGATGTTCGACGGGGACAAAACA GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
ctagctgtccaaattaacaattaaatggaatgtctgttccatttttccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG
aattaac putative branch site (score: 48)
tctgttccatttttcc putative PPT
aaattaacaattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcccgtatgtgcaccattatatattctgtatctccatgagtttgctagctgtccaaattaacaattaaatggaatgtctgttccatttttccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -gtgcacc
- - - - - - - - - - - - - - - - ctccatg
- - - - - - - - - - - - - - - - - - - - - -tgctagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtctg