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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatctagttgcctgtaagcatttttttggggtgatggaaaccctttagctcagaaaatagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacatatagatgagctgattgtgttttgaaaaaaaatccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAATGCATCATGGCTGCAGCGTAATCAGAGCGTAGCTCTGGGTAGTTTGGGA

Basic information

species Zea mays
transcript GRMZM2G107082_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 3'ss of exon 10
gtactgatctagt---tgcctgtaagcatttttttggggtgatggaaaccctttagctcagaaa---atagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacatatagatgagctgattgtgttttgaaaaaaaatccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAATGCATCATGGCTGCAGCGTAA-TCAGAGCGTA-GCTCTGGGTAGTTTGGGA
|||| ||||||||   | |   |   | | | | |  | |     | |||  |||  || |||    ||| |||  ||       |   | | || |||||||||  ||    |||||   ||   |     |  |     | |  ||||||||||||    |||||| ||     ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||| ||||| ||| | |    | | | ||||||   |   |  
gtacggatctagtgtctcctactgcacctctctctttgctatgcaagacctgttatgtctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatcctgaccatccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAATGCGTTATGGCCGCAGCATAAATGAAGATGCAAGTTCTGGGATCTGCAG--

upper sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 3'ss of exon 10
gtactgatcta--gttgcctg-taagcatttttttggggtgatggaaaccctttagctcagaaa---atagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacata---tagatgagctgattgtgttttgaaaaaaaatccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAATGCATCATGGCTGCAGCGTAA-TCAGAGCGTA-GCTCTGGGTAGTTTGGGA
|||| ||||||  ||  |||  |   | | | | |  | |     | |||  |||  || |||    ||| |||  ||       |   | | || |||||||||  ||    |||||   ||  | |  ||   | ||||| |     ||||||||||||    |||||| ||     ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||| ||||| ||| | |    | | | ||||||   |   |  
gtacggatctactgtctcctactgcacctctctctttgctatgcaagacctgttatatctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatc--ctgaccatcccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAATGCGTTATGGCCGCAGCATAAATGAAGATGCAAGTTCTGGGATCTGCAG--

upper sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 10
lower sequence: PP1S7_156V6.2 (Physcomitrella patens), 3'ss of exon 12
-------gtactgatctagttgcctgtaagcatttttttggggtgatggaaaccctttagctcagaaaatagatgtgaaaaatag--cattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacatatagatgagctgattgtgttttgaaaaaa--aatccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAATGCATCATGGCTGCAGCGTAATCAGAG-CGTAGCTCTGGGTAGTTTGGGA
         |  ||| | | |  | | |    | |   |  | || |    || ||||  ||||  |     || |      |||  ||| ||||  |  | |      |   |||||   |||   |  |      ||| | | |     ||| |  ||  | || |          | |    |||||| ||||| |||||||| | |||||||||||| ||||| |||||||| || | |||||     || || ||  || |   ||||   |    | ||     
gttaggcacaacgatttgggtttcagaacatgtctcgctttg-tgtttttcacacttt--ctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaac--tggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357576|gb|DN224549.1|DN224549
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|4966766|gb|AI691622.1|AI691622
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|40335268|gb|CK369338.1|CK369338
EST:     GACTGGCTAAAATGCATAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAATCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|89248869|gb|DY620655.1|DY620655
EST:     GACTGGTTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATTTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60352571|gb|DN219544.1|DN219544
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|71769086|gb|DR967023.1|DR967023
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60354935|gb|DN221908.1|DN221908
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|12969143|gb|BG266088.1|BG266088
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCG
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCG
EST: gi|148953531|gb|EE153040.2|EE153040
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60398717|gb|DN231533.1|DN231533
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|3191853|gb|AI001299.1|AI001299
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|113703225|gb|EE680729.1|EE680729
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|32851220|gb|CD990901.1|CD990901
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|13177931|gb|BG349114.1|BG349114
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|5922366|gb|AW055655.1|AW055655
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|37382552|gb|CF628229.1|CF628229
EST:     GATTGGCTAAAATGTGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|4827542|gb|AI668234.1|AI668234
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182331|gb|FL049128.1|FL049128
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182330|gb|FL049127.1|FL049127
EST:     GACTGGCTAAAATGCGTAAS-TTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|5871775|gb|AW018246.1|AW018246
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182334|gb|FL049131.1|FL049131
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|67017038|gb|CO445787.1|CO445787
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60401566|gb|DN234373.1|DN234373
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|78024963|gb|DV493350.1|DV493350
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|50332311|gb|CO527437.1|CO527437
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|16378083|gb|BI992269.1|BI992269
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182332|gb|FL049129.1|FL049129
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|60395413|gb|DN228283.1|DN228283
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211420152|gb|FL463211.1|FL463211
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211481515|gb|FL480068.1|FL480068
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|113703355|gb|EE680859.1|EE680859
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182329|gb|FL049126.1|FL049126
EST:     GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
EST: gi|211182333|gb|FL049130.1|FL049130
EST:     GACTGGCTAAAATGCGTAAS-TTGGTGCAGAACTCGGCGTTCCAATTGAG                         GTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA
genomic: GACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatct ... tccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacaacttcacatatagatgagctgattgtgttttgaaaaaaaatccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAATGCATCATGGCTGCAGCGTAATCAGAGCGTAGCTCTGGGTAGTTTGGGA
                     agctgat  putative branch site (score: 4)
                              tgttttgaaaaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgatctagttgcctgtaagcatttttttggggtgatggaaaccctttagctcagaaaatagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacatatagatgagctgattgtgttttgaaaaaaaatccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAATGCATCATGGCTGCAGCGTAATCAGAGCGTAGCTCTGGGTAGTTTGGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG