Sequence
atgc intronic sequence ATGC exonic sequencegtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctaggtactaggtaggttgtgtatgtgttggctttgaatcaaacaacatcattgcttgtggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G106683_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 3'ss of exon 10
gtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctaggtactaggtaggttgtgtatgtgttggctttgaatcaaacaa--catcattgcttgt---ggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
||| | | | | || | || | ||| | ||| ||||| | || | | || ||| || | ||| | | ||| | ||| ||||| | || ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||| |||||||| |||| |
gtataaaactagttttgtattattgctccttatca--ttttttttatttca-tatcaaaca--ttttgttgctgctacttttcatgctaactagcaatctatgcttttttgtgttgagGTATCCAATCTATGGTGGGATGCAAGACTGGAACTATATACATGGAGGTTGCTTTGAGTTAACCCTGGAAATTAGTGACGTAAAATGGCCAAAGGCAGCT
upper sequence: GRMZM2G106683_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA10G36590.1 (Glycine max), 3'ss of exon 10
gtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctaggtactaggtaggttgtgtatgtgttggctttgaatcaaacaacatcattgcttgtggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
| | | | | | || | |||| || | | | | | | ||| | || |||||| ||| | || | | || || ||||||||| ||||||| || ||||| || |||||||||||||||| ||||| |||||||| || ||||| |||||||| | || ||||| || || | |
------gtattgttgtatgaaagtattgcatagtag---ttcatgactgaaatcctat-tccttttaatatgtgcacaatttaca------aatagtactgactg-----cagGTACCCTCTATATGGGGGAATGCAAGATTGGAACTATATACATGCTGGCTGTTTTGAGTTGACCCTGGAAATTAGTGATAATAAATGGCCTAATGCTGCT
upper sequence: GRMZM2G106683_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA20G31000.2 (Glycine max), 3'ss of exon 3
gtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctaggtactaggtaggttgtgtatgtgttggctttgaat-caaacaacatcattgcttgtggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
| | || ||| || || | | | || | | | | ||| | || | || ||| ||| || | | ||||||||| ||||||| || ||||| || |||||||||||||||| ||||| |||||||| || ||||| ||| |||| | || ||||| | || | |
-------------------gtattgctgtataaaagtattgcatagt--agttcatgactgaagtctgtttccttttaatatgtgcacaatttacaa-atggtactcactgcagGTACCCTCTATATGGGGGAATGCAAGATTGGAACTATATACATGCTGGCTGTTTTGAGTTGACCCTGGAAATTTGTGATAATAAATGGCCCAGTGCTGCT
upper sequence: GRMZM2G106683_T02 (Zea mays), 3'ss of exon 10
lower sequence: AT1G71696.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctaggtactaggtaggttgtgtatgtgttggctt-tgaatcaaacaacatcattgcttgtggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
||| || | | |||| ||| || || | || | | |||| | || | || ||| | ||| | |||||||||||| |||||||| ||||| |||||||| || ||| |||| || |||||||| || |||||||| || || |||| |||||||| |||||
------------------------gtatcacatcaagtccccttactct--gtcttattcaacaaatgagtttcttggttaatgctttaagcaa----aacgctc----tacagGTACCCAATTTATGGTGGCATGCAAGACTGGAATTACATATATGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCA
upper sequence: GRMZM2G106683_T02 (Zea mays), 3'ss of exon 10
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 3'ss of exon 10
gtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctag-gtactaggtaggttgtgtatgtgttggctttgaatcaa--acaacatcattgcttgtggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
||| | || | | | | | || | | ||||| | | | | | || || | | ||| | || | | | | ||||||||| ||||||||||| ||||| || ||||||||||||||||| ||||| ||||| || || |||||||| ||||||| |||||||| || | |
----------------cggttatttttttttttaacaatcaagttgttaaaagtacttctcttttcttctttttattttctgtttagcaattgcttcaagaaaaacttttctgcagGTACCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaggttgtgtatgtgttggctttgaatcaaacaacatcattgcttgtggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
tttgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctaggtactaggtaggttgtgtatgtgttggctttgaatcaaacaacatcattgcttgtggtccagGTACCCAATATATGGTGGTATGCAGGACTGGAACTATATACATGGAGGCTGCTTTGAGTTAACTCTGGAGATTAGTGACACAAAGTGGCCAAAAGCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT