1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tattgacatcctttacttttcacaattttggctacttatgttttattttgttgctgcccttggagctcatctctattcttgtaatgttacaccttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCGTCCAGCTAGGAATATCAGTGAAATTTATGACAGTGTAGATCCAGAGGTT
species | Zea mays |
transcript | GRMZM2G106140_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAG TTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTACAGTACCGEST: gi|85152348|gb|DW587703.1|DW587703
genomic: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagag ... accttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCG
EST: TCACAATCATCTNGCAAG TTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCEST: gi|211413023|gb|FL028963.1|FL028963
genomic: TCACAATCATCT-GCAAGgtacatagag ... accttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACC
EST: TTGAACCTGCCAAGGGAGACATCAGGCGATGGATCACAATCATCTGCAAG TTATAAGTTCTCTCTAAAGAGGCGGCTGAGAGTAAGAACATTGCAGTACCGEST: gi|211413026|gb|FL028966.1|FL028966
genomic: TTGAACCTGCCAA-GGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagag ... accttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCG
EST: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCCAG TTATAAGTTCTCTCTAAAGAGGCGGCTGAGAGTAAGAACATTGCAGTACCGEST: gi|211413027|gb|FL028967.1|FL028967
genomic: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagag ... accttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCG
EST: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAG TTATAAGTTCTCTCTAAAGAGGCGGCTGAGAGTAAGAACATTGCAGTACCGEST: gi|211413025|gb|FL028965.1|FL028965
genomic: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagag ... accttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCG
EST: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAG TTATAAGTTCTCTCTAAAGAGGCGGCTGAGAGTAAGAACATTGCAGTACCGEST: gi|71314648|gb|DR793946.1|DR793946
genomic: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagag ... accttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCG
EST: ATTGAACCTGCCAAGGAGACATCANGCGATGGATCACAATCATCTGCAAG TTATAAGTTCTCTEST: gi|211413024|gb|FL028964.1|FL028964
genomic: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagag ... accttcgcagTTATAAGTTCTCT
EST: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAG TTATAAGTTCTCTCTAAAGAGGCGGCTGAGAGTAAGAACATTGCAGTACCG
genomic: ATTGAACCTGCCAAGGAGACATCAGGCGATGGATCACAATCATCTGCAAGgtacatagag ... accttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCG
ttttgttgctgcccttggagctcatctctattcttgtaatgttacaccttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCGTCCAGCTAGGAATATCAGTGAAATTTATGACAGTGTAGATCCAGAGGTT
caccttc CT-rich tract
taatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgacatcctttacttttcacaattttggctacttatgttttattttgttgctgcccttggagctcatctctattcttgtaatgttacaccttcgcagTTATAAGTTCTCTCTAAAGAGGCGGCTGAGAATAAGAACATTGCAGTACCGTCCAGCTAGGAATATCAGTGAAATTTATGACAGTGTAGATCCAGAGGTT
- - - - - - - - - - - - - - -ggctact
- - - - - - - - - - - - - - - - - - - - - - - - -gttgctg