1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtcgatggatcttgactagttcatacacacttgcccttaactgcattcttaccaccttggtttttatatccaattcatcccatcacatccttcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGTGCAACAAGAATGAGCAGCTGACCGCCAACTACCTCTTGGATCACATGC
species | Zea mays |
transcript | GRMZM2G105772_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|211085892|gb|FL199467.1|FL199467
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|6022682|gb|AW067610.1|AW067610
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|31364335|gb|CD448690.1|CD448690
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAGGTGTTCTTCGCGEST: gi|211120609|gb|FL462996.1|FL462996
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|12969428|gb|BG266372.1|BG266372
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|91876142|gb|EB406099.1|EB406099
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTTTTCGCGEST: gi|5081050|gb|AI738312.1|AI738312
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32919195|gb|CF024007.1|CF024007
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|148943102|gb|EC888158.2|EC888158
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAAGGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTTTTCGCGEST: gi|148951141|gb|EC896815.2|EC896815
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|9732268|gb|BE511020.1|BE511020
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|78023202|gb|DV491589.1|DV491589
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|33102722|gb|CF062682.1|CF062682
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|76011554|gb|DT938724.1|DT938724
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32866688|gb|CF006370.1|CF006370
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|149099558|gb|EE185596.2|EE185596
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32850349|gb|CD990030.1|CD990030
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|21891397|gb|BQ744610.1|BQ744610
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32867785|gb|CF007467.1|CF007467
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|78023686|gb|DV492073.1|DV492073
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|18167746|gb|BM337586.1|BM337586
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|5739612|gb|AI947407.1|AI947407
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|33103270|gb|CF063230.1|CF063230
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|91878896|gb|EB408853.1|EB408853
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAAGGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|33094018|gb|CF054012.1|CF054012
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGC CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32867786|gb|CF007468.1|CF007468
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|33093100|gb|CF053094.1|CF053094
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|6431781|gb|AW171985.1|AW171985
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32866689|gb|CF006371.1|CF006371
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|31363913|gb|CD448268.1|CD448268
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAGGTGTTCTTCGCGEST: gi|6654120|gb|AW267525.1|AW267525
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32849328|gb|CD989009.1|CD989009
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGNAGAACCAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|91054259|gb|EB164677.1|EB164677
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGEST: gi|32945337|gb|CF050156.1|CF050156
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
EST: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGT CTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
genomic: CAGCTGAGACCATTGCAGTGACTCCAGAGGAGAACGAAGCTATACTTCGTgtatgtcgat ... tcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCG
tcttaccaccttggtttttatatccaattcatcccatcacatccttcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGTGCAACAAGAATGAGCAGCTGACCGCCAACTACCTCTTGGATCACATGC
ttcttac putative branch site (score: 73)
catccttc putative PPT
tttttatatccaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcgatggatcttgactagttcatacacacttgcccttaactgcattcttaccaccttggtttttatatccaattcatcccatcacatccttcatgcgcagCTTGAAGGGATGGGCTTTGACCGGGCACTGGTCCTGGAAGTGTTCTTCGCGTGCAACAAGAATGAGCAGCTGACCGCCAACTACCTCTTGGATCACATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA