1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aatatattttggataattgtagggatcattttccttgaattagcttatgtagttattaagttgtcctgtaccgtgaaaatactttttctgttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGGCAGACAGCATGATATGCTAAGAGCCGCTGCTTTCATCAAACGATTAGCC
species | Zea mays |
transcript | GRMZM2G104983_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAG GGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGGEST: gi|6994023|gb|AW453237.1|AW453237
genomic: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAGgttttgtttc ... ttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGG
EST: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAG GGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGGEST: gi|32834730|gb|CD974408.1|CD974408
genomic: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAGgttttgtttc ... ttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGG
EST: CTCATACTGGAGTATCGGCCTGACAG GGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGGEST: gi|50335343|gb|CO530469.1|CO530469
genomic: CTCATACTGGAGTATCGGCCTGACAGgttttgtttc ... ttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGG
EST: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAG GGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGGEST: gi|211407591|gb|FL360130.1|FL360130
genomic: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAGgttttgtttc ... ttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGG
EST: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAG GGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGG
genomic: GATTTCTTTGTGCAGCTCTATAACCTCATACTGGAGTATCGGCCTGACAGgttttgtttc ... ttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGG
tatgtagttattaagttgtcctgtaccgtgaaaatactttttctgttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGGCAGACAGCATGATATGCTAAGAGCCGCTGCTTTCATCAAACGATTAGCC
ctttttctgtt CT-rich tract
tgaaaatacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatattttggataattgtagggatcattttccttgaattagcttatgtagttattaagttgtcctgtaccgtgaaaatactttttctgttacattcagGGATCATGGCGAGGTATTGGCTGATGCGCTGAAGACACTTCTTTGGGAAGGCAGACAGCATGATATGCTAAGAGCCGCTGCTTTCATCAAACGATTAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - -cttgaat
- - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcctg