1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caatcccacccaatacacttcaatacacatgtaatatcaataaccgaacaaggcctaagtggggtcgtttgtgatccagcttatgttttccttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAACTCTCTGAAAAATCCGACAGCTTCCACTGTGACGAAGAGTGTGTCGATG
species | Zea mays |
transcript | GRMZM2G104449_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGACTCCAG AGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAAEST: gi|211228762|gb|FL445456.1|FL445456
genomic: CAAGACTCCAGgtcagcatga ... cttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
EST: GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAG AGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAAEST: gi|149084045|gb|EE173441.2|EE173441
genomic: GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAGgtcagcatga ... cttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
EST: GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAG AGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
genomic: GACAGTCTTCCGAATGGCCATCCTGTTGCCGCAGCGCCACAAGACTCCAGgtcagcatga ... cttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAA
gaacaaggcctaagtggggtcgtttgtgatccagcttatgttttccttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAACTCTCTGAAAAATCCGACAGCTTCCACTGTGACGAAGAGTGTGTCGATG
cttatgttttcctt CT-rich tract
ttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatcccacccaatacacttcaatacacatgtaatatcaataaccgaacaaggcctaagtggggtcgtttgtgatccagcttatgttttccttgtcgcagAGAGAAAGCTAGCGATAGTGCCGCAGAGGAAGAAGACGCCGGCGACGAAAACTCTCTGAAAAATCCGACAGCTTCCACTGTGACGAAGAGTGTGTCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA