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...tgtgcatttttatgctgaacattcagatactttcatttcataatgaatattttgaactgtcaactgtaatttctattctcatgtttgcctttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
species | Zea mays |
transcript | GRMZM2G100913_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA TCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAGEST: gi|31355723|gb|CD440080.1|CD440080
genomic: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
EST: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA TCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAGEST: gi|67010842|gb|CO439591.1|CO439591
genomic: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
EST: GGCATCCATTCAGACA TCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAGEST: gi|26559055|gb|CA831290.1|CA831290
genomic: GGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
EST: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA TCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAGEST: gi|31364271|gb|CD448626.1|CD448626
genomic: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
EST: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA TCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAGEST: gi|211250423|gb|FL206024.1|FL206024
genomic: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
EST: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA TCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAGEST: gi|213179909|gb|FM186344.1|FM186344
genomic: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
EST: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA TCAAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAGEST: gi|22549188|gb|BU101389.1|BU101389
genomic: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
EST: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA TCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
genomic: CTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttcta ... ttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
aatattttgaactgtcaactgtaatttctattctcatgtttgcctttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
tttgccttt CT-rich tract
taatttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcatttttatgctgaacattcagatactttcatttcataatgaatattttgaactgtcaactgtaatttctattctcatgtttgcctttatcgacagTCGAGGCAGAAGGCCCAAGCAGATCTGCTAAAAGCGGAAAAGGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
-gtgcatt
- - - - - - tgctgaa
- - - - - - - - - -cattcag
- - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc