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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatttgtccctagcaagtgacattaagttgcatcagttagtttttcagaattctgtacaactttttttaaacgaattctaaaattaccatgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCATTTACTGCGTTATGTTTGGAATTGTCG

Basic information

species Zea mays
transcript GRMZM2G100484_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100484_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 3'ss of exon 11
gtaacatttgtccctagcaagtgacattaagttgcatcagttagtttttcagaattctgtacaactttttttaaacgaattctaaaattaccatgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCATTTACTGCGTTATGTTTGGAATTGTCG
                    ||  ||||       | || | |      || |  | | | |   ||||||     || |||| ||  |  |||| ||| ||||||||| || ||||| |||||||||||||| ||| ||||||| || || || |||||||| |||||||| |||||||
--------------------gtagcatttctccctagcattcaa-----cacacatttttgctgtttttttgg---gagttctgaatctgtcatggttgtagGAAAATTCGGTGCACTATTTGCCTCCATTCCATTCCCAATATTTGCGGCTATATACTGCGTAATGTTTGGCATTGTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50334185|gb|CO529311.1|CO529311
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATCTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
EST: gi|22545627|gb|BU097986.1|BU097986
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
EST: gi|26457048|gb|CA828631.1|CA828631
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
EST: gi|211271038|gb|FL034395.1|FL034395
EST:     AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTG                         GAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA
genomic: AAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCTTCTCCATTCTTGgtaacatttg ... atgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagaattctgtacaactttttttaaacgaattctaaaattaccatgattgcagGAAAATTTGGAGCACTTTTTGCCTCCATTCCTTTCACAATATTCGCTGCCATTTACTGCGTTATGTTTGGAATTGTCG
                                ttctaaa  putative branch site (score: 2)
               aactttttttaaacga  TA-rich tract