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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccaattactttttcatcgaaataagccggtcgaagttatcgaaatggcggtgtcttgttgaagttattcagatggcaatgtaacatccctcatctagttttgctttatccatgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAGCGAAGTATCAAACATAGCCGGCTCGGCTTGCAACTCCAACTCCAAGGG

Basic information

species Zea mays
transcript GRMZM2G099452_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099452_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 3'ss of exon 9
gtaagccaattactttttcatcgaaataagccggtcgaagttatcgaaatggcggtgtcttgttgaagttattcagatggcaatgtaacatccctcatctagttttgctttatccatgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAGCGAAGTATCAAACATAGCCGGCTCGGCTTGCAACTCCAACTCCAAGGG
                 | |   ||||    ||   | | || |  ||          ||  |  | ||||||||||    ||| | |   || |  ||||  ||||  || |   |  |||| ||  ||| |||| |||||||| ||| |||| ||||||||||||||  | || || ||||||||||||||| | || ||  |||||| ||||| |||||||| 
----------------gtaagttaaatttttcgtatgcaattttttaataaattcaaactgctccatgttattcagacaataatctgaagaccat--tctaagtttgaatttttttttgttggtagCTCATCAAGATTACATCACATTTTTGTGTTCGATCCCCGACGTGGAACACAGTGAAGTATCAAACATAACTGGTTCAACTTGCAGCTCCAGCTCCAAGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50336202|gb|CO531328.1|CO531328
EST:     CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA                         GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: gi|149089750|gb|EE179023.2|EE179023
EST:     CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA                         GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: gi|149033083|gb|EE154985.2|EE154985
EST:     CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA                         GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: gi|22491341|gb|BU051264.1|BU051264
EST:     TGTTCTAGACGCAA                         GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
genomic: TGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: gi|149033082|gb|EE154984.2|EE154984
EST:     CCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA                         GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
genomic: CCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
EST: gi|67029958|gb|CO458707.1|CO458707
EST:     CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAA                         GCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA
genomic: CGCTGTTAACCCAAAAGGCGCCCTCGATCCTGGCCTTGTTCTAGACGCAAgtaagccaat ... tgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagatggcaatgtaacatccctcatctagttttgctttatccatgcttggcagGCCATGAAGACTACATCACGTTTCTGTGCTCGATCCCCGACGTCAACCAGAGCGAAGTATCAAACATAGCCGGCTCGGCTTGCAACTCCAACTCCAAGGG
           atgtaac  putative branch site (score: 3)
          aatgtaa  TA-rich tract