1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acgccttgtgttttgtttatcggttattttgagacaccgcgtgttaatgtgcagtatactgataaatgtttatttgaatgataattatttttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG
species | Zea mays |
transcript | GRMZM2G098815_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGAGTAGTTTGTGNNNNNNNGCAGEST: gi|5740633|gb|AI948323.1|AI948323
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCGCAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|211480513|gb|FL444430.1|FL444430
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|60342225|gb|DN209198.1|DN209198
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|149005335|gb|EE039886.2|EE039886
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|71433708|gb|DR814758.1|DR814758
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|71759264|gb|DR957201.1|DR957201
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|76014272|gb|DT941442.1|DT941442
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|110944532|gb|EE164689.1|EE164689
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|84969904|gb|DW468307.1|DW468307
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|149082608|gb|EE171807.2|EE171807
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|78117670|gb|DV536057.1|DV536057
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGNNNNNNNGCAGEST: gi|148952744|gb|EC898725.2|EC898725
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|86472031|gb|DY238401.1|DY238401
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|60336775|gb|DN203748.1|DN203748
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGEST: gi|78022525|gb|DV490912.1|DV490912
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
EST: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAG GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
genomic: TTGTCCATGAGTACATCACAAATTGTATCCAATCATGTCAAAACATAAAGgtttgttctt ... ttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAG
aatgtgcagtatactgataaatgtttatttgaatgataattatttttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG
tactgat putative branch site (score: 2)
ttattttttt putative PPT
tatactgataaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgccttgtgttttgtttatcggttattttgagacaccgcgtgttaatgtgcagtatactgataaatgtttatttgaatgataattatttttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG