1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gccattttattgtttgttccaagttctcctctgcatttgtctacaacagtgccggttaaccttgttttgactgtgagttctaacaatcaaagctctccagGGCTCAAGAACAGTAACCTGGACACATGTATACTTGGAGTGATTGCG
species | Zea mays |
transcript | GRMZM2G098679_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGAATAAACGGTATAATCTTTTATGCAGGTAGCATCTTCAAAGCTGCAG GGCTCAAGAACAGTAACCTGGACACATGTATACTTGGAGTGATTGCGEST: gi|60350539|gb|DN217512.1|DN217512
genomic: TGGAATAAACGGTATAATCTTTTATGCAGGTAGCATCTTCAAAGCTGCAGgtaagctgtg ... agctctccagGGCTCAAGAACAGTAACCTGGACACATGTATACTTGGAGTGATTGCG
EST: TGGAATAAACGGTATAATCTTTTATGCAGGTAGCATCTTCAAAGCTGCAG GGCTCAAGAACAGTAACCTGGACACATGTATACTTGGAGTGATTGCG
genomic: TGGAATAAACGGTATAATCTTTTATGCAGGTAGCATCTTCAAAGCTGCAGgtaagctgtg ... agctctccagGGCTCAAGAACAGTAACCTGGACACATGTATACTTGGAGTGATTGCG
acagtgccggttaaccttgttttgactgtgagttctaacaatcaaagctctccagGGCTCAAGAACAGTAACCTGGACACATGTATACTTGGAGTGATTGCG
ttctaac putative branch site (score: 272)
ctctcc putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccattttattgtttgttccaagttctcctctgcatttgtctacaacagtgccggttaaccttgttttgactgtgagttctaacaatcaaagctctccagGGCTCAAGAACAGTAACCTGGACACATGTATACTTGGAGTGATTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - tgtttgt
- - - - - - - - - - - - - - - ctgcatt
- - - - - - - - - - - - - - - - - - - - -tacaaca
- - - - - - - - - - - - - - - - - - - - - - - - -tgccggt