1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttggtgacttgctatttgtttctctgtttacatattgatgtttaaacttttgtagttttgctaattggcttgtttttagATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATTCTATTTTATGCTGCGAGCATCTTCAAAGCTGCTG
species | Zea mays |
transcript | GRMZM2G097768_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCATAAGGTTCGCTGATATCAAACAGAAGAGATACAGTGTTCCCCTTGTG ATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATTEST: gi|21390663|gb|BQ528712.1|BQ528712
genomic: CCATAAGGTTCGCTGATATCAAACAGAAGAGATACAGTGTTCCCCTTGTGgttggtgact ... ttgtttttagATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATT
EST: CCATAAGGTTCGCTGATATCAAACAGAAGAGATACAGNGTTCCCCTTGTG ATAGGAATCGGTCTCCTTGCCCTGCAGCAGCTAAGTGGTGTCAATGGCATTEST: gi|71772625|gb|DR970553.1|DR970553
genomic: CCATAAGGTTCGCTGATATCAAACAGAAGAGATACAGTGTTCCCCTTGTGgttggtgact ... ttgtttttagATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATT
EST: CCATAAGGTTCGCTGATATCAAACAGAAGAGATACAGTGTTCCCCTTGTG ATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATT
genomic: CCATAAGGTTCGCTGATATCAAACAGAAGAGATACAGTGTTCCCCTTGTGgttggtgact ... ttgtttttagATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATT
tgtttacatattgatgtttaaacttttgtagttttgctaattggcttgtttttagATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATTCTATTTTATGCTGCGAGCATCTTCAAAGCTGCTG
tgctaat putative branch site (score: 2)
cttgttttt putative PPT
atattgatgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgacttgctatttgtttctctgtttacatattgatgtttaaacttttgtagttttgctaattggcttgtttttagATAGGAATCGGTCTCCTTGTCCTGCAGCAGCTAAGTGGTGTCAATGGCATTCTATTTTATGCTGCGAGCATCTTCAAAGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT