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...ggtgaaagatggttttagtagtacttaatgtcacctctcttcatttttcgtcatagtgggctgttattttgctgcattctcatgcttagtttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
species | Zea mays |
transcript | GRMZM2G097226_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGATGTTACCATTACTGCATTCTCCAAGATGGTTGGCTATGCTCTCCAG GCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAGEST: gi|32829636|gb|CD969314.1|CD969314
genomic: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAGgtatgtcatg ... ttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
EST: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG GCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAGEST: gi|211317947|gb|FL318710.1|FL318710
genomic: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAGgtatgtcatg ... ttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
EST: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG GCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAGEST: gi|32829111|gb|CD968789.1|CD968789
genomic: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAGgtatgtcatg ... ttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
EST: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG GCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAGEST: gi|60343110|gb|DN210083.1|DN210083
genomic: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAGgtatgtcatg ... ttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
EST: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG GCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAGEST: gi|211088145|gb|FL307530.1|FL307530
genomic: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAGgtatgtcatg ... ttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
EST: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG GCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAT
genomic: AAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAGgtatgtcatg ... ttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
tttcgtcatagtgggctgttattttgctgcattctcatgcttagtttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
tttgtcttc CT-rich tract
tgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgaaagatggttttagtagtacttaatgtcacctctcttcatttttcgtcatagtgggctgttattttgctgcattctcatgcttagtttgtcttcagGCTGCAGAGATACTGTCCAAGGAAGGAATCAGTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA