1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacagtctaggaaatggattctgcaaggcgggcagtactcttattacgtatcacgctgataattttggaaacaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAACAAGAAGGACGCCAAATTCTACAGCAACATGTTCGCCAAGATGACAAA
species | Zea mays |
transcript | GRMZM2G096585_T05 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|5650182|gb|AI920542.1|AI920542
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACANEST: gi|5608208|gb|AI901875.1|AI901875
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|4826215|gb|AI667843.1|AI667843
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|60351882|gb|DN218855.1|DN218855
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|37376205|gb|CF624609.1|CF624609
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|113658312|gb|DW814887.1|DW814887
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|32936492|gb|CF041311.1|CF041311
genomic: CGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: GAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACGG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|5688792|gb|AI941807.1|AI941807
genomic: GAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|5670926|gb|AI932189.1|AI932189
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCNCTGGAAATCGATCCTGACANCAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACANEST: gi|32936333|gb|CF041145.1|CF041145
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|22473281|gb|BU037761.1|BU037761
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCCCTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|37384658|gb|CF629420.1|CF629420
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACT-GAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|33092662|gb|CF052656.1|CF052656
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCATGTTTTAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|5525796|gb|AI861689.1|AI861689
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTG-CAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|67012006|gb|CO440755.1|CO440755
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAEST: gi|166535356|gb|EG144318.1|EG144318
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAA
EST: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAG GGATGTCAAGT
genomic: CTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGgtacagtcta ... acaatcccagGGATGTCAAGT
aggcgggcagtactcttattacgtatcacgctgataattttggaaacaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAACAAGAAGGACGCCAAATTCTACAGCAACATGTTCGCCAAGATGACAAA
cgctgat putative branch site (score: 4)
tgataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtctaggaaatggattctgcaaggcgggcagtactcttattacgtatcacgctgataattttggaaacaatcccagGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAACAAGAAGGACGCCAAATTCTACAGCAACATGTTCGCCAAGATGACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG