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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagttatcccttcttagcctgtttattaacatctggaaaatgtttttttatttgttcttttttttatctattttgatgtgcaatcaacattgttgtcttcatacattaatttgcagGGCCTGCACTTGTGACCACAAAAGATGCCGGAGATGCAATTACACTACTGCAATCTCTTGCTGGGTCTACTTTTGACAGCAGCCAGCTTGTATTGACAGC

Basic information

species Zea mays
transcript GRMZM2G095868_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095868_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g17540.1 (Oryza sativa), 3'ss of exon 11
gtattagttatcccttcttagcctgtttattaacatctggaaaatgtttttttatttgttcttttttt-----tatctattttgatgtgcaatcaacattgttgtcttcatacattaatttgcagGGCCTGCACTTGTGACCACAAAAGATGCCGGAGATGCAATTACACTACTGCAATCTCTTGCTGGGTCTACTTTTGACAGCAGCCAGCTTGTATTGACAGC
                  || | |  |   | | |     |   | |  | |||||||||||||| |       ||  || |  | ||| |||| ||| |||||||||  ||  || ||||| ||||||||| || ||||||||||| ||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||| || ||||| ||||||||
---------------gtataacttaatccctgaaaaagctattgtttcctattatttgttcttttctaataagcattgatgtgtaagtgtaatctacactgttgtctttgtatgttgatttgtagGGCCTGCCCTGGTGACCACAAAGGATGCTGGAGATGCAATTACATTATTGCAATCTCTTGCTGGCTCTACTTTTGACAGCAGTCAACTTGTGTTGACAGC

upper sequence: GRMZM2G095868_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA10G05490.1 (Glycine max), 3'ss of exon 11
gtattagttatcccttcttagcctgtttattaac-atctggaaaatgtttttttatttgttcttttttttatctattttgatgtgca-atcaacattgttgtc------ttcatacattaatttgcagGGCCTGCACTTGTGACCACAAAAGATGCCGGAGATGCAATTACACTACTGCAATCTCTTGCTGGGTCTACTTTTGACAGCAGCCAGCTTGTATTGACAGC
|||||   | |   ||    |  ||||||| |   |||||   ||  |    |   |   |  |    | |  ||  ||  |||  | |||  | ||  |||       ||  ||  |    ||  ||| |||||| | || || ||||||||||| || |||||||||||| |  | ||||| |||| ||| || || ||||| |||||||||||||| || || ||
gtattgaattttgatttcctg--tgtttatgagtgatctgagcaaactagcatctgtaagtagtaaactaaattaaattattgtttatatcttccttaatgtaacacaatttttatctcgtattctagGTCCTGCATTAGTTACAACAAAAGATGCTGGTGATGCAATTACATTGTTTCAATCACTTGTTGGTTCAACATTTGATAGCAGCCAGCTTGTCTTTACTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatctattttgatgtgcaatcaacattgttgtcttcatacattaatttgcagGGCCTGCACTTGTGACCACAAAAGATGCCGGAGATGCAATTACACTACTGCAATCTCTTGCTGGGTCTACTTTTGACAGCAGCCAGCTTGTATTGACAGC
                                          cattaat  putative branch site (score: 3)
                                    ttcatacattaattt  TA-rich tract