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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 11
gtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
|| ||||  | | | |||| || |||||| | ||||  ||    | |      | | | ||   |  |  || |||    |  | |   || | |          || ||  || ||   |   |  ||||   |  ||||||||               ||   |  || |  |    |||    ||||||||| || ||||| || |||||| |||||||||| || ||||||||||||
gtactttcttttctgttcttttattgagt-agcaaagatt---ttcttggtaagagtaact---ggctgcttcatactccacctcaatattatga----------cacatgaatgtaacttaatagatcttctatattttttact---------------ctacctcaatattttcttgtta----ctttcagATATACCCACCCATCAATGTCTTGCCATCTCTCTCTCGATTGATGAAG

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 10
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 10
gtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataa--ctaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttattt--ttactacct-tgatagcttatctgt-----gttgatgtgatggcattatattctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
                                                          |   |||   ||  |   |  |    |||||| |  | || || || |    | |   ||   | | ||    | |    ||||  |   ||    ||  || || |  |      |||||| | |||  || ||  |  | ||||| || |||||||| ||||| ||||||||||| || ||||||||||||
----------------------------------------------------------gtattggttctaacttcgagccaggcttaacaatactcatattcttgcatccagtttcatcataggagatacttcttcccatttgatcgttagtgatggaaggttgtaagcctttagttgatctaatgtaatgatgatgatgcagATCTACCCACCTATCAATGTGCTGCCATCTCTGTCGCGATTGATGAAG

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 10
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 11
gtgcttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagctctggaattatttataactaatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
                             |||  | |   |  |||| |    | ||    ||||||   | |  |    || |   || |  |  |     | |  | || |  |    | |  ||||||           | ||     | |  | |||||| |  ||||   | | | ||       ||||||||||| |||||||||||  |||| ||||| ||||| |||||||||
----------------------------gtattgatt--caagctttgaagcagtgct-tactggaag-gtctgaattggatctttgatatcatggtgggagttttgtcttcacgtctggttttgagtcttg---------caatatacaaagatgtgatctgtctcaatgttgcgtcgtgatg------cagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13198699|gb|BG354501.1|BG354501
EST:     GGCAGCT-CATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: GGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32929245|gb|CF034057.1|CF034057
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|5915388|gb|AW053029.1|AW053029
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31352565|gb|CD436922.1|CD436922
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|6445489|gb|AW179407.1|AW179407
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928465|gb|CF033277.1|CF033277
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60353112|gb|DN220085.1|DN220085
EST:     GGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: GGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31352616|gb|CD436973.1|CD436973
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928932|gb|CF033744.1|CF033744
EST:     ACATTACTGAGGGCCAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|67022236|gb|CO450985.1|CO450985
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|211474169|gb|FL062077.1|FL062077
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|67040204|gb|CO466459.1|CO466459
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32929097|gb|CF033909.1|CF033909
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32944174|gb|CF048993.1|CF048993
EST:     ACATTACTGAGGGACAGATATGCATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60358048|gb|DN225021.1|DN225021
EST:     AGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: AGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32838699|gb|CD978380.1|CD978380
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60345561|gb|DN212534.1|DN212534
EST:     AGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: AGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|6056572|gb|AW090977.1|AW090977
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|33092363|gb|CF052357.1|CF052357
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928990|gb|CF033802.1|CF033802
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGTTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32944913|gb|CF049732.1|CF049732
EST:     ACATTACTGAGGGACAGATATGCATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31352900|gb|CD437257.1|CD437257
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|31351441|gb|CD435798.1|CD435798
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|32928322|gb|CF033134.1|CF033134
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|211466584|gb|FL062035.1|FL062035
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|5871234|gb|AW017705.1|AW017705
EST:     CATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: CATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60357117|gb|DN224090.1|DN224090
EST:     ATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|24934300|gb|CA452518.1|CA452518
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|33101328|gb|CF061288.1|CF061288
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|6021392|gb|AW066320.1|AW066320
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|213171194|gb|FM184433.1|FM184433
EST:     GCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: GCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|60344123|gb|DN211096.1|DN211096
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|33100800|gb|CF060760.1|CF060760
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|13125963|gb|BG316638.1|BG316638
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCA
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCA
EST: gi|60343460|gb|DN210433.1|DN210433
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
EST: gi|4152268|gb|AI372402.1|AI372402
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCC
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCC
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG                         ATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
genomic: ACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttct ... attctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcagATTTATCCACCTATTAATGTCCTGCCATCTCTTTCACGATTGATGAAG
                         tgttgat  putative branch site (score: 4)
                                            tattctttc  putative PPT
                                        attatattctttca  TA-rich tract