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gtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAAGGAAACAG
species | Zea mays |
transcript | GRMZM2G092776_T05 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAEST: gi|149106666|gb|EE188560.2|EE188560
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAEST: gi|89252188|gb|DY623974.1|DY623974
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAEST: gi|74233198|gb|DT641112.1|DT641112
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCCATCGACAG ATCAGATAAAGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAEST: gi|148966542|gb|EE017566.2|EE017566
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: TTGCCGCTACAGATTTTTATTGATAGTAAATGGTTTGTTGCTATCGACAG ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTTTTAAGGGACTGCAEST: gi|211299421|gb|FL314585.1|FL314585
genomic: TTGCCGCTACAGA-TTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCCATCGACAG ATCAGATAAAGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAEST: gi|91877535|gb|EB407492.1|EB407492
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: CAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAEST: gi|110960194|gb|EE180246.1|EE180246
genomic: CAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: TTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: TTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
atctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAAGGAAACAG
tatcctctc CT-rich tract
ttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCAAGGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA