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...atttaagatcttacaatgccctttggcatattttaaatggaaatcaaagcactctgtttctttgttatttatttgttgtataatttgcttccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA
species | Zea mays |
transcript | GRMZM2G090087_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTGTCTGAAAGEST: gi|211228708|gb|FL216926.1|FL216926
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTT-TCTGAAAG
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|67019711|gb|CO448460.1|CO448460
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|33101148|gb|CF061108.1|CF061108
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|67026280|gb|CO455029.1|CO455029
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAA-TGAAGAA-CTTTCTGAAAGAEST: gi|67024223|gb|CO452972.1|CO452972
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|211228710|gb|FL216928.1|FL216928
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGGAAGAAACTTTCTGAAAGEST: gi|24773212|gb|CA408466.1|CA408466
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATG-AAGAAACTTTCTGAAAG
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|67023454|gb|CO452203.1|CO452203
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|32846970|gb|CD986651.1|CD986651
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|211120258|gb|FL200679.1|FL200679
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|32847832|gb|CD987513.1|CD987513
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAEST: gi|211228712|gb|FL216930.1|FL216930
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGA
EST: CTTGTAGCGGTCAGAAATGCTCTGCTCAATCTGTTCTATTCATGCACAAG AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAAG
genomic: CTTGTAGCGGTCAGAAATGCTCTGCTCAGTCTGTTCTATTCATGCACAAGgtaaagactg ... ccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAA-G
aaagcactctgtttctttgttatttatttgttgtataatttgcttccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA
tttgcttcc CT-rich tract
tttctttgttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaagatcttacaatgccctttggcatattttaaatggaaatcaaagcactctgtttctttgttatttatttgttgtataatttgcttccacttgcagAATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA