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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccaactttagacaaacaaacaaaaaaatcctgctttttactctaaataaatgtcatttttatgtcaatctgaatggcaaaggctgataaattgtgcgctcctgttgtgctgtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTTGCCAGAGGCTTTGGTCCTGATGAGGTCCCAGATCTCTATGAGGGGGCTA

Basic information

species Zea mays
transcript GRMZM2G085747_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085747_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os10g35960.2 (Oryza sativa), 3'ss of exon 10
-----------------------------------------gtaagccaactttagacaaacaaacaaaaaaatcctgctttttactctaaataaatgtcatttttatgtcaatctgaatggcaaaggctgataaattgtgcgctcctgttgtgctgtact-tgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTTGCCAGAGGCTTTGGTCCTGATGAGGTCCCAGATCTCTATGAGGGGGCTA
                                            |   | |||  | || |||       || | |   || |    | |  |  ||   | |  | | |  |  |||||   |  || |      || |   |  ||||| ||||||||  || |||| |||||||| ||| | || |||| ||||||| ||||||| || || | ||||||||| ||||||||||| ||||| | ||||||| ||||||||||||
gtaagctattttatgcaagaaaatatcaacttctcttttccaatatatatcttctgccatacatgtgttcaattgcaa-ttctggggcaagctttataa-agtcctgtttttacatgaataata--ggtttgcttcttattttccactgttatgctgtaccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATGCCAGAGGTTTTGGTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74232917|gb|DT640831.1|DT640831
EST:     TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
genomic: TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaac ... gtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
EST: gi|32850587|gb|CD990268.1|CD990268
EST:     TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
genomic: TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaac ... gtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
EST: gi|26456270|gb|CA827853.1|CA827853
EST:     TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
genomic: TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaac ... gtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctgaatggcaaaggctgataaattgtgcgctcctgttgtgctgtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTTGCCAGAGGCTTTGGTCCTGATGAGGTCCCAGATCTCTATGAGGGGGCTA
               ggctgat  putative branch site (score: 4)
                  tgataaatt  TA-rich tract