1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgtggctatatgctaatgcttctaaccttgcttctgcttgtcattactctatccacagtataactgaaaacgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTTGCAAGAAGCGCCTGGCCAAACATGTGTTGGATGTGACAGGTGTTACGA
species | Zea mays |
transcript | GRMZM2G085577_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTEST: gi|211057776|gb|FL419530.1|FL419530
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCT
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTEST: gi|211327557|gb|FL371056.1|FL371056
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCT
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTEST: gi|94480423|gb|EB709381.1|EB709381
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCT
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTEST: gi|76924590|gb|DV170029.1|DV170029
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCT
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTEST: gi|94472102|gb|EB701060.1|EB701060
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCT
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTEST: gi|211319769|gb|FL419318.1|FL419318
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCT
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTEST: gi|91877192|gb|EB407149.1|EB407149
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCT
EST: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAA TTTGCAGATGATGAAAAGCTTCATGGCTGAGTGGGGCAGCAGCCAA
genomic: AGTCAGATCAGTGGACAAGTAATCTTGATCTGCTCACTGGACTTCGCAAAgtatgtggct ... cgttcaacagTTTGCAGATGATGAAAAGCTTCATG-CTGAGTGGG-CAGCAGCCAA
ccttgcttctgcttgtcattactctatccacagtataactgaaaacgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTTGCAAGAAGCGCCTGGCCAAACATGTGTTGGATGTGACAGGTGTTACGA
gtataac putative branch site (score: 252)
agtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggctatatgctaatgcttctaaccttgcttctgcttgtcattactctatccacagtataactgaaaacgttcaacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCAGCAGCCAAGTTATCTTGCAAGAAGCGCCTGGCCAAACATGTGTTGGATGTGACAGGTGTTACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC