1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtttgtttctaccatgatagttaataacttatcatgtacaaggtatgagtacatctgctttcaatatgagcagggttaaccctttgaaagaaaaaatagtttagtggccgacaccatgaagtgttgggttctatattatgttcccctcaatcattcactggttgctcttaacaattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCAAGAACCCTGGCAGAAAATGCCGGACTTAGCGCAATGGATGTAATATCC
species | Zea mays |
transcript | GRMZM2G083095_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|24773918|gb|CA409172.1|CA409172
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|60357186|gb|DN224159.1|DN224159
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|148978583|gb|EE026232.2|EE026232
genomic: GTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATGGAAGGAGTTCTCTTTGAAGGAAACAGG GTGGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|60396537|gb|DN229406.1|DN229406
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|60337628|gb|DN204601.1|DN204601
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|211337113|gb|FK966354.1|FK966354
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAA-STTTGAAATGGTTCCEST: gi|211337111|gb|FK966352.1|FK966352
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: AGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAA-STTTGAAATGGTTCCEST: gi|91053532|gb|EB163950.1|EB163950
genomic: AGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|13178118|gb|BG349376.1|BG349376
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|60394726|gb|DN227596.1|DN227596
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|33094754|gb|CF054748.1|CF054748
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|60358886|gb|DN225859.1|DN225859
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|71431586|gb|DR812636.1|DR812636
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|211337115|gb|FK966356.1|FK966356
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCATTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|33092559|gb|CF052553.1|CF052553
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|5919524|gb|AW054621.1|AW054621
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: AGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|149105114|gb|EE290597.2|EE290597
genomic: AGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|148972050|gb|EE022890.2|EE022890
genomic: GCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|78024594|gb|DV492981.1|DV492981
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCEST: gi|4885786|gb|AI676906.1|AI676906
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCC
EST: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGG GTTGGANNCCAGTATGCTNGTTGCGAAATTTGCTGAAAGCTTTGAAATGGT
genomic: GAAATAGAGCTGGCAAAGAGATTGAAGGAGTTCTCTTTGAAGGAAACAGGgtaagtttgt ... aattgtgcagGTTGGA--CCAGTATGCT-GTTGCGAAATTTGCTGAAAGCTTTGAAATGGT
gttctatattatgttcccctcaatcattcactggttgctcttaacaattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCAAGAACCCTGGCAGAAAATGCCGGACTTAGCGCAATGGATGTAATATCC
tcttaac putative branch site (score: 2)
atattatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgtttctaccatgatagttaataacttatcatgtacaaggtatgagtacatctgctttcaatatgagcagggttaaccctttgaaagaaaaaatagtttagtggccgacaccatgaagtgttgggttctatattatgttcccctcaatcattcactggttgctcttaacaattgtgcagGTTGGACCAGTATGCTGTTGCGAAATTTGCTGAAAGCTTTGAAATGGTTCCAAGAACCCTGGCAGAAAATGCCGGACTTAGCGCAATGGATGTAATATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC