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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacaaaaaaatgacacttcaatccatgcttattgatttctttatctttactagcctataatgagttcttttgtcaaacattgtttctcagAGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACT

Basic information

species Zea mays
transcript GRMZM2G082855_T04
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082855_T04 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 3'ss of exon 10
gtgagtacaaaaaaatgacacttcaatccatg---cttattgatttcttta----------------------------tctttactagcctataatgagttcttttgtcaaacattgtt--tctcagAGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACT
|||||||    |  | |||| ||||||||||     ||| |  ||||| ||                            ||| || ||    ||||||| ||||| | |  |   || ||  |||||||||||| |||||||| || ||||| ||||| |||||| ||||||| ||||| || ||||| || || |||||
gtgagta---gagcacgacatttcaatccataggttttagtagtttctgtaatatttttttgactgaaattcagtagtttctgtaatattggataatgaattcttatattcattttttttattctcagAGACCTGAGTGAGAACGAGCTGGTAGGGCCCATTCCTTCTATACTGGGCAATCTATCCTATACTGGAAAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148940443|gb|EC885241.2|EC885241
EST:     ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT                         AGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA
genomic: ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCTgtgagtacaa ... tgtttctcagAGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA
EST: gi|149079906|gb|EE168912.2|EE168912
EST:     ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT                         AGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA
genomic: ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCTgtgagtacaa ... tgtttctcagAGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA
EST: gi|148964982|gb|EC906062.2|EC906062
EST:     ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT                         AGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA
genomic: ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCTgtgagtacaa ... tgtttctcagAGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA
EST: gi|101383199|gb|EB813654.1|EB813654
EST:     ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT                         AGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA
genomic: ATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCTgtgagtacaa ... tgtttctcagAGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttatctttactagcctataatgagttcttttgtcaaacattgtttctcagAGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACT
                                            ttgtttctc  CT-rich tract
     ttatcttta  TA-rich tract