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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtctcagctccctgagctactttcttgtaaattgtaatgttataacaattggttttatactgattcttttttacctttttttatttcagATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTG

Basic information

species Zea mays
transcript GRMZM2G081642_T03
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78125549|gb|DV543933.1|DV543933
EST:     GCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATG                         ATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCA
genomic: GCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATGgtgaggtctc ... tttatttcagATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCA
EST: gi|21329781|gb|BQ485162.1|BQ485162
EST:     AAACACTGCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATG                         ATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCA
genomic: AAACACTGCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATGgtgaggtctc ... tttatttcagATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCA
EST: gi|21481154|gb|BQ577837.1|BQ577837
EST:     AAACACTGCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATG                         ATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCA
genomic: AAACACTGCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATGgtgaggtctc ... tttatttcagATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgttataacaattggttttatactgattcttttttacctttttttatttcagATGGCACATCTGTAATTGAATTGTTGTCTGATAGCATGAACCAACTGTCCATTAAGAATGAGAATCACTTG
                       tactgat  putative branch site (score: 2)
                         ctgattcttttttacc  CT-rich tract
                  ttttatactgattctt  TA-rich tract