1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtcctctctggacaccagcaattaaaaaacaaatccagaaactactctgctttcatatatgtgcagtaatttctccagaaactactctggacaccagcttcatttcttgccatacaacctctgcttttggtatgaacatctggtatcttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTTTGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCC
species | Zea mays |
transcript | GRMZM2G081188_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTTGCCATACGACCTCTGTTTGAG GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTEST: gi|74240504|gb|DT648418.1|DT648418
genomic: TCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTEST: gi|211302733|gb|FL372536.1|FL372536
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGAACTCTGTTTGAG GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTEST: gi|32936978|gb|CF041797.1|CF041797
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: GAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTEST: gi|31353527|gb|CD437884.1|CD437884
genomic: GAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG GATGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTEST: gi|32930803|gb|CF035615.1|CF035615
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
EST: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG GACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
genomic: AAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAGgtatgtcctc ... ttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCT
tttcttgccatacaacctctgcttttggtatgaacatctggtatcttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTTTGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCC
tcttaat putative branch site (score: 1364)
tatcttaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcctctctggacaccagcaattaaaaaacaaatccagaaactactctgctttcatatatgtgcagtaatttctccagaaactactctggacaccagcttcatttcttgccatacaacctctgcttttggtatgaacatctggtatcttaattatagGACGAGAGATACATGGTAACATATAACCCAACAAAGGATAAAGTATATGCTTTGCTCAAGGACCAGGCAAAATCAGACGACATTATTAAAGCTGCTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT