1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaaatgttactgtcagtacagtcaataaaacggcactgaaccagtctttctctggttctgaactcattctatggtttcagGGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTATATACTGTGTATTGTTTGGCTACGTCG
species | Zea mays |
transcript | GRMZM2G080387_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAG GGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTAEST: gi|32945003|gb|CF049822.1|CF049822
genomic: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAGgtgaaatgtt ... atggtttcagGGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTA
EST: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAG GGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTAEST: gi|32941435|gb|CF046254.1|CF046254
genomic: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAGgtgaaatgtt ... atggtttcagGGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTA
EST: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAG GGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTAEST: gi|9731370|gb|BE510122.1|BE510122
genomic: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAGgtgaaatgtt ... atggtttcagGGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTA
EST: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAG GGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTA
genomic: AAGAGTCATTCAGATCTCCGCTGGTTTCATGATCTTCTTCTCTATCCTAGgtgaaatgtt ... atggtttcagGGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTA
taaaacggcactgaaccagtctttctctggttctgaactcattctatggtttcagGGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTATATACTGTGTATTGTTTGGCTACGTCG
attctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatgttactgtcagtacagtcaataaaacggcactgaaccagtctttctctggttctgaactcattctatggtttcagGGAAATTCGGAGGGCTGTTCGCCTCAATTCCATTCACGGTGTTTGCTGCTATATACTGTGTATTGTTTGGCTACGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT