1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcttaacggtggcaggaattattcagtcaccatgcgcagttaggaactaagtttacagtgattgatggcactaattatctgatcaatatctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTCTGGACAACCGTATCCAAGGCCACATAGATCAGGTTAACAAGCTGCTAG
species | Zea mays |
transcript | GRMZM2G079196_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|33096883|gb|CF056843.1|CF056843
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|67012630|gb|CO441379.1|CO441379
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|211450030|gb|FL052872.1|FL052872
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|211507840|gb|FL110003.1|FL110003
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTEST: gi|67023333|gb|CO452082.1|CO452082
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|211507839|gb|FL110002.1|FL110002
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|74246199|gb|DT654113.1|DT654113
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|83279086|gb|DV943094.1|DV943094
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTTGAGCAGCTGTTGGTGTCACTCATTEST: gi|211450031|gb|FL052873.1|FL052873
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|37375261|gb|CF624055.1|CF624055
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|211450032|gb|FL052874.1|FL052874
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|211450033|gb|FL052875.1|FL052875
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|45847141|gb|CN071084.1|CN071084
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|60394631|gb|DN227501.1|DN227501
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTEST: gi|211507838|gb|FL110001.1|FL110001
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
EST: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAG GAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
genomic: TCAAGCTTATTAAACCATATACTCGAATCAGGATACCATTCATTTCACAGgtagatattt ... ctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATT
aactaagtttacagtgattgatggcactaattatctgatcaatatctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTCTGGACAACCGTATCCAAGGCCACATAGATCAGGTTAACAAGCTGCTAG
actaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttaacggtggcaggaattattcagtcaccatgcgcagttaggaactaagtttacagtgattgatggcactaattatctgatcaatatctgcattcagGAACTCAATTTTCCAGAAAAGGATGTCGAGCAGCTGTTGGTGTCACTCATTCTGGACAACCGTATCCAAGGCCACATAGATCAGGTTAACAAGCTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - -catgcgc
- - - - - - - - - - - - - - - - - - - - - - gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgatg