Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtatcagaatcttcgttgttttgtacagaaaatagaaactaggttcctgatcaccaattggaaactgccttttgaactttgctgctatttactgctatagtttgtactgtgtgcaacattatttgtagtgctaactgtttaatgataagattatatacacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCGCATGTGCATAGGCTGAGTGCTTATGCATCACAAAGGCTAGTTAGTCTCT

Basic information

species Zea mays
transcript GRMZM2G078576_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 3'ss of exon 10
gtaggtatcagaatcttc-gttgttttgtacag-aaaatagaa--actaggttcctgatc--accaattg-gaaactgccttttgaactttgctgctatttactgctatagtttgtactgtgtgcaacat-----tatttgtagtgctaactgtttaatgataagattatatacacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCGCATGTGCATAGGCTGAGTGCTTATGCATCACAAAGGCTAGTTAGTCTCT
||| |||||||| | ||  |||||||||||||| ||| | |||  |||  || | |||||  |||  ||| |||  |   ||||  |  ||  ||||||  | || || ||  | ||| |||| | |  |      | | |   || |   |||||| ||| ||| |||| |||   |  |||||||||||||||| |||||||| ||||||||| ||||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||||| ||||
gtacgtatcagatttttttgttgttttgtacaggaaagtcgaagcactttgtacttgatcttaccttttgtgaagttctttttttcatcttcttgctatccaatggtacagcctatacagtgtaccatgtgctaacactagacatggttcttgtttactgacaagcttatctac---tatagGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211241026|gb|FL065527.1|FL065527
EST:     TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGA                         GATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTC
genomic: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatca ... acacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTC
EST: gi|32793737|gb|CD945973.1|CD945973
EST:     TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGA                         GATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCT
genomic: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatca ... acacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCG
EST: gi|7304677|gb|AW600616.1|AW600616
EST:     TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGA                         GATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCG
genomic: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatca ... acacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaacattatttgtagtgctaactgtttaatgataagattatatacacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCGCATGTGCATAGGCTGAGTGCTTATGCATCACAAAGGCTAGTTAGTCTCT
                        tgtttaatgataagat  TA-rich tract