Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaggtgaaaagatggttttgtttttttgcatttcaatgtttaatagtttaacaactagaataaccttactgatgaagtgttgtactttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG

Basic information

species Zea mays
transcript GRMZM2G078458_T04
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T04 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 3'ss of exon 10
--gaggtgaaaagatggttttgtttttttgcatttcaatgtttaatagtttaacaactagaataaccttactgatgaagtgttgta-ctttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
  ||    | || ||| ||   | |  |   || |  ||      ||   | |  |||  ||||   || |||||||| ||   ||  ||||| ||||| ||||||||||| ||||| |||||||||||  |||||||||||||||| ||||||||||||
gagaaactacaaaatgattaaatgtcatcaaatattcataccgttta---tgattactgaaatatagttgctgatgaaatgacatagttttgtttacttgcagGAACTACTATACCTCTATGGATTTGTAATTGACAACAATCCTGACGATTATCTCATG

upper sequence: GRMZM2G078458_T04 (Zea mays), 3'ss of exon 10
lower sequence: Vv04s0043g00790.t01 (Vitis vinifera), 3'ss of exon 10
gaggtgaaaagatggttt-tgtttttttgcatttcaatgtttaatagtttaa---caactag---aataaccttactgatgaagtgttgtactttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
        |   ||| || |    || || || | |     ||  |   | |   | |||||   |  ||| |        ||    | | ||||   |   | |||||  |||||||||| |||||||||||  |||| || ||||| ||||| |||||||||
-------gactgtggcttataccattgtgaatgttaccagataggaaactgagtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211219813|gb|FL295369.1|FL295369
EST:     CTGAGACTGGAGCANAGATCTGCATAAACTACGGCAACAAAGGAAATGAG                         GAACTACTGTACCTTTATGGATTTGNGGTTGACAACAATCCTGATGATTAT
genomic: CTGAGACTGGAGCAGAGATCTGCATAAACTACGGCAACAAAGGAAATGAGgtattactca ... gtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaacaactagaataaccttactgatgaagtgttgtactttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
                     tactgat  putative branch site (score: 2)
          tagaataa  TA-rich tract