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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcacatttacctggacacttcggggatgcttggcttttatagatttaggtagtttgtacttataattgtagcttcttcactatgttgtctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGGGGCTCTGTTAGGGCTGCAATGGGCCACCCTGAACCATTCCCAGTGAAAT

Basic information

species Zea mays
transcript GRMZM2G077299_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077299_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 3'ss of exon 10
attcacatttacctggacacttcggggatgcttggcttt-tatagatttaggtagtt--tgtacttataattgtagcttcttcac-tatgttgtctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGGGGCTCTGTTAGGGCTGCAATGGGCCACCCTGAACCATTCCCAGTGAAAT
    || | | |  | | |   |    ||  ||  |||  |  ||| |  |||||||    ||     | || |   ||    || | |  ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||
----acctatccaagaaaataccaaatatcttttccttaattgagactatggtagttatcataacaccacttttgttttgggaacgtctcctgtctctctacagGACGTATTGGACAGTCTAGAATTTGCAAGGGGGAGTGCAGATTCGACATGGGGTTCTGTTAGAGCTGCAATGGGGCACCCTGAACCATTCCCTGTCAAAT

upper sequence: GRMZM2G077299_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g03730.3 (Oryza sativa), 3'ss of exon 10
attcacatttacctggacacttcggggatgcttggcttttatagat-ttaggtagtttgtacttataattgtagcttcttcacta--------tgttgtctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGGGGCTCTGTTAGGGCTGCAATGGGCCACCCTGAACCATTCCCAGTGAAAT
         ||||  || | | |       |||  |||  || ||   || ||   ||||  | | |   ||   || ||    |        |||||||| ||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||| ||||| ||||||||||| || ||||
---------taccaagaaaatactaaatatcttttcttgaattgaagctatgttacttgtcgtaacaccagttttttgtttgggaacatctcttgttgtctctctacagGACGTATTGGACAGTCTAGAATTTGCAAGGGGGAATGCAGATTCAACATGGGGTTCTGTTAGAGCTGCAATGGGGCACCCCGAACCATTCCCTGTCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32847594|gb|CD987275.1|CD987275
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|12045517|gb|BF727656.1|BF727656
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCATGGTTTAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|32846175|gb|CD985856.1|CD985856
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGGCAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|6095297|gb|AW119964.1|AW119964
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|211082959|gb|FL420012.1|FL420012
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|32865761|gb|CF005443.1|CF005443
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|78179997|gb|DV550370.1|DV550370
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|211043015|gb|FL421679.1|FL421679
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|32846927|gb|CD986608.1|CD986608
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|32835529|gb|CD975207.1|CD975207
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|71441725|gb|DR822775.1|DR822775
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
EST: gi|32846588|gb|CD986269.1|CD986269
EST:     TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAG                         GATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG
genomic: TCAGCCACAATGATGAAGTTGATACTGTTGCTATTGCTCCTTTTGTAAAGgtatgttttg ... ctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaggtagtttgtacttataattgtagcttcttcactatgttgtctttctacagGATGTATTGGACAGTATAGAATTTGCAAGGGGGAGTGCAAATTCAACATGGGGCTCTGTTAGGGCTGCAATGGGCCACCCTGAACCATTCCCAGTGAAAT
                                         ttgtctttct  CT-rich tract
         tttgtacttataatt  TA-rich tract