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...aatgcaatttagcagatttagcattcgtctcatgtttatatgtaggcattaatagtatgtattatgtttaatcatccattgtggttgtgtaccggtgcagCATGAAAGTGTGAGAGAAATCACAGATGTTCTAGATGCTGTGGGCAACACAACTAAAGCTACTACAAAAGGATTTGCCATAGGATCAGCAGCACTGGCAT
species | Zea mays |
transcript | GRMZM2G075900_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGGTCCTATAGCTGACAATGCTGGTGGTATTGTTGAGATGAGCCAGCAG CATGAAAGTGTGAGAGAAATCACAGATGNTTCTAGATGCTGTGGGCAACACEST: gi|21760004|gb|BQ635545.1|BQ635545
genomic: TTGGTCCTATAGCTGACAATGCTGGTGGTATTGTTGAGATGAGCCAGCAGgtatacacat ... accggtgcagCATGAAAGTGTGAGAGAAATCACAGATG-TTCTAGATGCTGTGGGCAACAC
EST: TTGGTCCTATAGCTGACAATGCTGGTGGTATTGTTGAGATGAGCCAGCAG CATGAAAGTGTGAGAGAAATCACAGATGTTCTAGATGCTGTGGGCAACACA
genomic: TTGGTCCTATAGCTGACAATGCTGGTGGTATTGTTGAGATGAGCCAGCAGgtatacacat ... accggtgcagCATGAAAGTGTGAGAGAAATCACAGATGTTCTAGATGCTGTGGGCAACACA
gcattaatagtatgtattatgtttaatcatccattgtggttgtgtaccggtgcagCATGAAAGTGTGAGAGAAATCACAGATGTTCTAGATGCTGTGGGCAACACAACTAAAGCTACTACAAAAGGATTTGCCATAGGATCAGCAGCACTGGCAT
aatagtatgtattatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgcaatttagcagatttagcattcgtctcatgtttatatgtaggcattaatagtatgtattatgtttaatcatccattgtggttgtgtaccggtgcagCATGAAAGTGTGAGAGAAATCACAGATGTTCTAGATGCTGTGGGCAACACAACTAAAGCTACTACAAAAGGATTTGCCATAGGATCAGCAGCACTGGCAT
aatgcaa
- - - - - - - - - -agcattc
- - - - - - - - - - - - - - - catgttt
- - - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg