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gtaagtagctgaaatatgcttggcgcctcctgcaatatgtgctcttttgatctgagacagctcttgtacttgattgcacattagatcattcagattgttcacatgaggtgttcattcttcagagcaactttattttcattcttattggattaaccaataatatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG
species | Zea mays |
transcript | GRMZM2G074351_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTAAGGCACATGTTCACTCCTGCTGAGTTAAGA GCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCEST: gi|60339717|gb|DN206690.1|DN206690
genomic: TTAAGGCACATGTTCACTCCTGCTGAGTTAAGAgtaagtagct ... tatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGC
EST: TTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA GCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCEST: gi|32837936|gb|CD977614.1|CD977614
genomic: TTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGAgtaagtagct ... tatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGC
EST: TTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA GCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCEST: gi|211013609|gb|FL363381.1|FL363381
genomic: TTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGAgtaagtagct ... tatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGC
EST: TTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA GCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCEST: gi|211309996|gb|FL325113.1|FL325113
genomic: TTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGAgtaagtagct ... tatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGC
EST: TCCTACTACAGTACATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA GCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCEST: gi|32933834|gb|CF038646.1|CF038646
genomic: TCCTACTACAGTA-ATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGAgtaagtagct ... tatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGC
EST: ACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA GCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGC
genomic: ACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGAgtaagtagct ... tatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGC
tcttcagagcaactttattttcattcttattggattaaccaataatatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG
gattaac putative branch site (score: 43)
tatccttc putative PPT
aactttattttcattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagctgaaatatgcttggcgcctcctgcaatatgtgctcttttgatctgagacagctcttgtacttgattgcacattagatcattcagattgttcacatgaggtgttcattcttcagagcaactttattttcattcttattggattaaccaataatatccttcagGCTGATGAAGAGCTTCTTTCTGAGCTTGAGACTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCTGTGGATAATGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA